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the plugin runs single-ended sequences that are of type 'SampleData[SequencesWithQuality]' fine but when I import the same sequences with the same manifest using the data type 'SampleData[JoinedSequ…
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From [this forum post](https://groups.google.com/d/topic/qiime-forum/C0T8qxSlLzI/discussion), I think the option documentation for split_libraries_fastq.py's -q/--phred_quality_threshold, -r/--max_bad…
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ORCID has APIs that can return paper identifiers of the following types:
https://pub.orcid.org/v3.0/identifiers
For example, about 10% [Casey Greene's papers returned from ORCID](https://pub.orcid…
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PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation – Guangping Huang et al. – Microbiome 2023
https://microbiomejournal.b…
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The long-term gut bacterial signature of a wild primate is associated with a timing effect of pre- and postnatal maternal glucocorticoid levels – Simone Anzà et al. – Microbiome 2023
https://microbio…
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Posted here!
https://taylorreiter.github.io/2022-07-28-From-raw-metagenome-reads-to-phyloseq-taxonomy-table-using-sourmash-gather-and-sourmash-taxonomy/
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Differences in the Composition of Gut Microbiota between Patients with Parkinson's Disease and Healthy Controls: A Cohort Study. J Clin Med. 2021 Dec 3;10(23):5698. https://pubmed.ncbi.nlm.nih.gov/34…
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Gut Microbiota Dysbiosis Induced by Decreasing Endogenous Melatonin Mediates the Pathogenesis of Alzheimer's Disease and Obesity -- Zhang et al. -- Frontiers in Immunology
https://www.ncbi.nlm.nih.go…
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Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries - Vivianne Cruz - frontiers
https://www.frontiersin.org/journals/microbiology/article…
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Hi,
I have 40 samples split into 4 16s sequencing runs. But after merge the 4 runs and do alpha diversity analysis, I found they show significantly statistical difference from each other.
All th…