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Continuing the work on https://github.com/geneontology/go-ontology/issues/23424 (Membrane terms obsoletion: integral component of membrane), annotations to the 'extrinsic component of membrane' terms …
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MAR04280 (pyruvate[m] + NADH[m] lactate[m] + NAD+[m]) should be removed, because [having any significant amount of LDH activity in the mitochondrial matrix would rapidly dissipate the mitochondrial m…
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https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0030150
GO:0030150 protein import into mitochondrial matrix
is currently a child of
GO:0006626 protein targeting to mitochondrion
This is a true…
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Hi Remi,
I was wondering how mitochondrial-genomes specific is MitoFinder ?
Do you think it would work on Wolbachia for instance ? To me it looks like it should, given a set of Wolbachia genes in…
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Hi Lin,
In the profile folder under MT_database "Cnidaria_CDS_protein.fa" is present. However, the corresponding CDS_HMM information and option for Cnidaria in "--clade" are missing.
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Definition |
The process in which SRP binds to the signal peptide in a nascent protein, causing protein elongation to pause, during cotranslational membrane targeting.
has the parent
cell…
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This is a quick fix but users should know that when doing any kind of multiome analysis, `addGeneExpressionMatrix()` is not accurately calculating `Gex_MitoRatio`. There are two sources of error here …
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hi @sylvainpoux Let's do this one next. I don't think these should map to DNA binding.
Val
KW-0238 no evidence for DNA binding
DNA binding S.pombe P36627 translational activator
DNA binding S…
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### Discussed in https://github.com/SysBioChalmers/Human-GEM/discussions/832
Originally posted by **HayaAlSiyabi** June 27, 2024
Please help, I have followed the advice given to others with th…
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reviewed here for fission yeast
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9041340/
useful for modelling the pathway quickly.
I have captured already most of the 'causal model' in figure 4.