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Could imagine a step which annotated MT with MFAnnot (https://github.com/BFL-lab/Mfannot) and then either used different locus prefix (eg add an M to the locus name), to annotate these.
Generally …
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Hi there,
I really enjoy your tool! It's been very helpful for me, as I've been annotating the genome of a less common model organism. I am annotating a new version of the genome that was just sequ…
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Hello! One of my genomes with a recent whole-genome duplication in the sunflower family (notoriously repeat-rich) has spent 26 days so far in the straining step, making it to round 8. Unfortunately, t…
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Hello,
We are running FCS on a set of genomes before submission to NCBI. We use the following command:
```
python3 fcs.py --image {fcs_img} screen genome --fasta {input.asm_fasta} --gx-db {par…
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Hello!
I am assembling a beetle mitochondrial genome, using this [mt genome](https://www.ncbi.nlm.nih.gov/nuccore/NC_038115.1) from the same beetle family as the seed. It appears mostly assembled, …
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I am trying to extract animal mitochondrial genome from short reads data using getorganelle. the script is-
get_organelle_from_reads.py -1 /home/pragya/hornbill/great/NZH/analysis/fastp/NZH_illumina…
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Hi, I want to use PAMT to assemble soybean mitochondrial genome, here is my script:
PMAT autoMito -i canu_raw.correctedReads.fasta.gz -o ./19.chloroplast_assembly/07.pmat_data/test1 --task p1 -st O…
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Hi,
I'm trying to use MitoHiFi to assemble a multi-chromosome plant mitochondrial genome (though running the pipeline on individual chromosomes at a time). I'm using a singularity instance built fr…
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Had working code and now every cwl workflow I try with the post API just returns a 200. Using the API demo code.
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currently these go directly under 'chromosome':
they should be inferred to be under '…