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Recently Paul (VCGS) flagged that Mito variants are coming through into Exome AIP reports
The final line of `gs://cpg-common-main/references/hg38/v0/exome_calling_regions.v1.interval_list`
is `chr…
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Hi,
I would like to extract plant mitochondrial reads from the whole genome Oxford Nanopore? Do you have any idea which software-related for this? Like GetOrganelle for Illumina reads.
Thank you.
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Some ideas from a chat with Fred Jaya. Use the wiki to give a few examples of simple benchmarks, e.g.
1. RaxML vs. IQ-TREE on individual loci (fix models to be equal, assess trees in one piece of s…
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Most terms have an xref to a namespace with a prefix `GC_ID`. Is anyone familiar with what that is or what it abbreviates?
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Hey,
Great tool, it's very useful and easy to use!
I ran Merqury on an Illumina-based assembly I had and obtained a completeness estimate much larger than I expected, given the genome's known siz…
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Hello!
I was trying to run MitoFinder and got the error "ERROR: MetaSPAdes didn't run well".
When checking the metaspades.log within the created result directory, it showed the following:
…
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I can use the image to create the relative directories and download the example database but I can not download the query db.
$ docker run --rm ncbi/blast efetch -db protein -format fasta \
-id …
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Hi,
I was running CHROMEISTER on a plant genome against itself (~1 Gbp) where I expected to see some synteny between chromosomes, but did not see any. I then tested CHROMEISTER on a chloroplast ge…
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#ERROR: Blast is not available!
This is an issue for setting up GetOrganelle Database using "get_organelle_config.py" .
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Hello,
I have been using Exomiser for some time but have a specific issue that is causing some confusion:
I have a list of a handful of variants (1-3) that I want to input into Exomiser and esse…