issues
search
roblanf
/
BenchmarkAlignments
Benchmark empirical datasets for phylogenetic method development
Other
16
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add concat and loci folders
#60
roblanf
opened
9 months ago
0
update yaml tests
#59
roblanf
opened
9 months ago
0
remove all datasets from new_2023 branch
#58
roblanf
closed
9 months ago
0
name edits script and csv file
#57
roblanf
opened
9 months ago
0
add dataset_curation section to yaml file
#56
roblanf
closed
9 months ago
1
include gene family datasets
#55
roblanf
opened
11 months ago
1
add some transposon datasets
#54
roblanf
opened
11 months ago
0
Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification.
#53
roblanf
opened
11 months ago
0
A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins
#52
roblanf
opened
1 year ago
0
include iqtree trees for each dataset, and alisim commands
#51
roblanf
opened
1 year ago
0
update yaml file
#50
roblanf
closed
9 months ago
1
include raxml-format partition files
#49
roblanf
opened
1 year ago
0
separate out nexus files
#48
roblanf
opened
1 year ago
1
add a csv file with alignment information
#47
roblanf
opened
1 year ago
2
add locus charpartitions
#46
roblanf
closed
9 months ago
1
change charset to charpartition for genomes
#45
roblanf
opened
1 year ago
0
check all alignments and turns tabs to 4 spaces
#44
roblanf
opened
1 year ago
0
A genome-scale phylogeny of the kingdom Fungi
#43
roblanf
opened
1 year ago
0
figure out a programmatic way to get the timetree dates
#42
roblanf
closed
9 months ago
1
run tests with nextflow
#41
roblanf
closed
9 months ago
6
benchmark ideas
#39
roblanf
opened
1 year ago
3
Rightmeyer_2013 - error with final position in CHARSETS
#38
caitlinch
opened
5 years ago
0
empirical distributions
#37
roblanf
opened
5 years ago
1
new dataset
#36
roblanf
opened
5 years ago
0
check genome assignments in Looney_2016
#35
roblanf
opened
5 years ago
0
change dx.doi.org to doi.org
#34
roblanf
closed
9 months ago
1
add link to figshare dataset in yaml file
#33
roblanf
closed
9 months ago
1
add dataset?
#32
roblanf
opened
5 years ago
1
new dataset
#31
roblanf
opened
5 years ago
2
new dataset
#30
roblanf
opened
5 years ago
0
new dataset
#29
roblanf
opened
5 years ago
0
new dataset
#28
roblanf
opened
5 years ago
0
include a script to split alignments into partitions
#27
roblanf
closed
5 years ago
1
new dataset
#26
roblanf
opened
5 years ago
1
new dataset
#25
roblanf
opened
5 years ago
0
consider adding https://datadryad.org/resource/doi:10.5061/dryad.hj07m
#24
roblanf
opened
5 years ago
0
run all alignments through geneious
#23
roblanf
closed
9 months ago
2
Missing data in 'Wood_2012' dataset
#22
cynthiawqy
opened
5 years ago
0
Tereza
#21
roblanf
closed
8 years ago
0
yaml checker problem
#20
roblanf
closed
5 years ago
5
pull in tereza's changes
#19
roblanf
closed
8 years ago
0
Master
#18
terezasenfeldova
closed
8 years ago
4
YAML checker now uses package "httr" to test for valid URL
#17
snubian
closed
9 years ago
0
Broughten, Brown, Caterino and Cognato (Finals)
#16
AliceFSmith
closed
8 years ago
0
finished files
#15
AliceFSmith
closed
9 years ago
0
Broughton (May commit)
#14
AliceFSmith
closed
9 years ago
1
Broughton & Brown
#13
AliceFSmith
closed
9 years ago
1
YAML parser initial working version
#12
snubian
closed
9 years ago
0
Broughten
#11
AliceFSmith
closed
9 years ago
1
Finished Broughten
#10
AliceFSmith
closed
9 years ago
1
Next