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Thank you for creating such an efficient tool.
## Expected Behavior
I would like to obtain a foldseek result that includes alntmscore and the protein sequences of the hits
## Current Behavior
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Thanks for the great work!
I am actually trying to curate the PepMD dataset. I found that the post_process cannot be executed.
https://github.com/yaledeus/FBM/blob/0d9f1e3065cc0a37839fa2f253ed…
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I would like to assign a taxonomic label to my protein sequences using the blast NR database and the mmseqs taxonomy command available in the docker image (quay.io/microbiome-informatics/mmseqs:2.13).…
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Hi folks! Thanks for maintaining this software. I've been trying to set up the GTDB database for taxonomy analysis, but can't seem to get the database set up regardless of the computer used (I've trie…
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Hello,
I'm trying to make the mmseqs-web API work but I'm encountering several issues.
This is the Dockerfile I used to build the API:
```
FROM --platform=linux/amd64 golang:latest as builde…
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Hi,
I am running precomputed_alginment_mmseqs.py, everything is up running (for now). but when I check the usage of cpus (my Vitural machine has 6 vcpus), it seems like mmseqs is not using the cpu a …
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Hi,
I want to cluster a large dataset of DNA sequences. Must I first convert my fasta file into a DB format file? As is written here: https://github.com/soedinglab/MMseqs2/wiki#linclust, or can I u…
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If you run `colabfold_search` with `--use-templastes 1` option, it will generate a single `.m8` file containing the template hits as well as MSAs. I am wondering how I can make `colabfold_batch` to us…
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**Caution: Please only report your issue related to the installation on your local PC or macOS.** If you can get the help message by `colabfold_batch --help` or run a test prediction successfully, you…
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Some issues / unexpected behavior when running mmseqs search and other features used in colabfold. But the low speed happens in the mmseqs step, so I think this is the place to ask.
Unexpected obse…