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## What were you trying to do and how can we improve it?
Shutting down the federal government shutdown to slow the spread of the virus and stopping the virus spread of COVID/Monkeypox and Omicron Va…
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Related to #881
Currently, `augur translate` does not implement `gff3` standard properly. Confusingly, if you use `.gff` files generated automatically by Genbank from a given `.gb` file, augur tra…
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### Current Behavior
Because of the behavior described in https://github.com/nextstrain/ingest/issues/18, the ingest pipeline does not include sequences in it's fetch from NCBI Virus. This results in…
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Hhow come the backup RSS fetcher only pulls in ~250k stories each day, while the prod system finds almost a million? I've updated the backup one so it has all the RSS feeds that have:
* active=True
…
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The first step in making this repository useful is to populate it with scripts that are currently manually copied around pathogen repos.
See [shared GDoc](https://docs.google.com/document/d/1ThWh_R…
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I'm attempting to create a CNN model using image data. My entire data set was divided into train, test, and validation. I used class_mode = 'categorical' for the training data since training data need…
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Hello,
I've been trying to download monkeypox genome for the last three days. I'm using the nextstrain pipeline ([https://github.com/nextstrain/monkeypox/tree/master/ingest](url)). It uses the follow…
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there is a bug with MPOX WORLD.
Cumulative sum monkeypox deaths has a maximum of 42, this is from United States.
However, if I filter the data on Country to just show USA and then plot Cumul…
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Sorry to bother you. The latest data seems to be unavailable via the hyperlink. Any help would be appreciated. https://raw.githubusercontent.com/globaldothealth/monkeypox/main/latest.csv
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In #1422, we only looked at descriptions using HTML in ETL. However, there are still some charts and explorers using HTML: Those from manual configs in explorers, datasets that were manually imported …