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Hello Digital Proteomics team,
I would like to ask about the MzMLChromatogramStAXParser. I am currently trying to parse through Chromatogram tags with the dp-mzml library, however, I keep getting n…
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Hi,
I have converted wiff files to mzML with [this container](https://hub.docker.com/r/chambm/pwiz-skyline-i-agree-to-the-vendor-licenses) using the below command:
```
singularity run --env WIN…
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mass calibration module preview seems to be broken -> move all to simple charts
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Hi SIRIUS team,
I tried importing mzML/mzXML files containing MS1/MS2 information into Sirius (4.9.3), but only a small part of the precursors with their respective MS2 information show up in Siriu…
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### Description of the bug
```
tail -n 500 -f /hps/nobackup/juan/pride/reanalysis/proteogenomics/PXD010154/work/b6/6e37bc1f0f149a2785a8bd4d3968ab/out_17_sage.log
Found Sage version string: Version…
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Hi,
I have .wiff data and converted this to .mzML with Proteowizard so that I could run DiaNN on Linux. The results of analysing the .mzML files on Linux (v 1.8.1) were quite different compared to …
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Dear FlashLFQ team,
I generated a custom TSV file, according the guidelines, for FlashLFQ on mzML files, however the it keeps giving me the same error in command line and GUI:
[ErrorReport.txt](…
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Some mzML files are reported to have 0 MS/MS spectra. For example: [MSV000083463/Milk_final_11712.SUBJECT57.MBM.1333.mzML](https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=0a4e79b555eb4987b3cd0e03…
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I have an application that will read only non-compressed mzML files. I can make these easily using msConvert within ProteoWizard. From here, I need to edit a few values within the headers for all sp…
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Hello all. I was getting the rather vague error
```
Problem opening mzml file spectra/Ctrl1_5min_total.mzML; One or more errors occurred.
```
When I re-converted my files using different settings…