-
There are actually two public transcritomes.
1. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Raw sequence reads were submitt…
-
@ssarrafan @emileyfadrosh and others from NMDC went through milestones and priorities and wanted to follow up something that's not a specific milestone but is a priority for Emiley's talk in June.
…
-
- `depth2` is being deprecated in https://github.com/microbiomedata/nmdc-schema/blob/issue-486-data-to-7-0 (which will actually result in a new version of the schema, greater than 7.0.0)
- the releas…
-
Some options:
1. Specify the unit and include it in the term label
2. Specify the unity but don't include it in the term label. Include in definition.
3. Allow different units and include unit in t…
-
This is especially relevant to the export NCBI XML task, with contributors @sujaypatil96 @aclum @chienchi etc.
If we are submitting `Biosample` records to NCBI, we want to indicate the various peop…
-
Paper: https://www.nature.com/articles/ng.3862
Lots here to capture, someone will need to get into the supplemental data and try to track some of this down.
- Genome and annotation - 391 Mb of …
-
what about the "animals" for pet animals online buy them look out their pictures and get advice about their well care as well for their food ,,,,
-
linkml-validate finds examples of metegenome omics_processing records that were left in their non re-IDed state, presumably due to losing response from the minter API while running `update-study`
C…
-
currently slightly ahead of MIxS 6.0:
https://raw.githubusercontent.com/microbiomedata/mixs/1da849346a80b717810a02d7c8ed74a22bcd84de/model/schema/mixs.yaml
change to: https://raw.githubusercontent…
-
```python
import xml.etree.ElementTree as ET
import sqlalchemy
from sqlalchemy import create_engine, MetaData
import csv
import pandas as pd
INPUT_FILE = 'ncbi_biosample_package_definitions.xm…