-
Hi, thanks for this great tool. Is it possible to access the original uploaded files for an accession in SRA? I am trying to recover raw fastqs from 10x samples uploaded as bams to SRA. I am told by S…
whtns updated
3 months ago
-
https://mp.weixin.qq.com/s/cPsR1i49__zQZmTcLDmg0g
ixxmu updated
1 month ago
-
**Project description**
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
**Metadata**
* homepage URL: https://trace…
-
Hi,
I am testing the ITS sequencing data which are publicly available in NCBI Sequence Read Archive (SRA) under the BioProject ID PRJNA610042. Follow DADA2 ITS Pipeline Workflow (1.8).
The Primer …
-
* [x] Add ability to associate assembled genome with `SequencingObject`
* [x] Add ability to automatically assemble a genome on upload
* [x] Add ability to save an assembly back to a sample - issue #2…
-
Hi,
I'm trying to run hyb on the example data using Mac OSX on a 2018 MacBook Air.
I've installed all dependencies besides flexbar 2.5 using Conda (edit: flexbar 2.5 was installed manually). My …
-
Hello, is it possible to use fasterq-dump to download original format fastq files?
prefetch and fastq-dump are too slow.
I tried to prefetch SRR21834810 but it did not work at all. I wanted t…
-
I got this error like this. Does anyone can help to fix??
I run command on HPC:
snippy --R1 $p_trim/VN0467_1_paired.fastq.gz --R2 $p_trim/VN0467_2_paired.fastq.gz --outdir /lustre7/home/buihoangphu…
-
Hello
I was just wondering if there was a detailed description of an *.sra file layout?
I am interested in experimenting with building a tool to extract sequencing records from these files but …
-
Hi I am trying to predict gene structure using Finder.
And it seems this tool is better than PASA, MAKER,,,
So I am planning to get used to this tool.
However, the example data you shared, I coul…