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http://search.bt.com/result?p=nextsetup88.com&Location=Location&channel=Test1
http://fufu1123.mystrikingly.com/blog/fca77257058
http://forcus1004.mystrikingly.com/blog/a-sleep-the-heart-to-rouse…
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Hi, I have been trying to run antigen garnish for a while with your testdata and now it seems to run fine with parallel and netMHC. The issue is that in the folder as e.g. ag_f236b988a09e438ea2 it doe…
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hi, your tool is wonderful and your tutorials are very detailed. However, I encountered this error when running the T antigen workflow.
In [14]: snaf.JunctionCountMatrixQuery.generate_results(path=…
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Dear developers of Pandora
Do you have any tips about modeling MHC-I 9mers of mut/wt peptides derived from Single nucleotide variants?
I have the following case of study
mut peptide:CVRVSGQ…
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Hi there,
I was reading through your project and found it to be incredibly helpful for my research. However, I noticed that some datasets mentioned in your paper that are provided with source link.…
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Hello developer!
Thank you for the wonderful tool you put together.
I got an error which I don't know where it come from. Running test worked fine, but when I use the real data it results in this …
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### Installation Type
Standalone
### pVACtools Version / Docker Image
4.0.8
### Python Version
3.10
### Operating System
Ubuntu 22.04
### Describe the bug
Full warning message:
```
/usr/loc…
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I just tried to run the workflow on a WGS dataset and got an error message from two of the CNNScore tasks (out of 40 total). I tried to verify the problem by running the failed task directly, both wit…
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### Installation Type
Docker
### pVACtools Version / Docker Image
griffithlab/pvactools:4.0.1
### Python Version
_No response_
### Operating System
_No response_
### Describe the bug
Hello,
…
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Hi,
I have 2 questions:
1- Is there a better documantion of the output files?
2- In the "neoantigens/sample1/Class_II/" diretory the following files are missing:
sample1_MHC_Class_I_all_epi…