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### Description of the bug
I installed the latest version of docker on Ubuntu LTS 22.04 and it fails to run the test pipeline.
Note 1 / Nextflow was installed within a mamba-created environment h…
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/scflow pipeline do…
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We are close to releasing our new pipeline schema which describe input parameters. Through chatting to people at BOSC 🍐 I've become aware of a project called [Bioschemas](https://bioschemas.org) which…
ewels updated
3 years ago
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Funcotator has slightly different annotations to snpsift, includes GO terms
https://gatk.broadinstitute.org/hc/en-us/articles/360037224432-Funcotator
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Hi, we are learning from this project. Because our HPC does not give us the root authority to use Docker, we have to either build a Singularity image based on a Docker image, or build the Docker image…
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Dear developer,
Sorry to bother you, really good pipeline for analyzing imaging data. Cause I am quite new to this, when I repeat the examples, I got the errors like this.
(base) yangfan@huntsm…
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https://github.com/labsyspharm/mcmicro-nf/issues/126
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Nextflow seems to be hanging after the pipeline fails when running on a slurm cluster. Here is the full .nextflow.log. This particular pipeline has a `workflow.onComplete` block that also isn't bein…
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Hi Team,
I noticed that there is a huge differences between rmsk.bigBed and GCF_009914755.1_T2T-CHM13v2.0_rm.out as shown below:
5,586,304 rmsk.bed (converted from rmsk.bigBed using bigBedTob…
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**Description**
Process `BACTOPIA:ASSEMBLER:ASSEMBLER_MODULE (reads)` terminated with an error exit status (1)
**Steps to Reproduce**
bactopia --sample reads --se fastqs/raw_reads.fastq.gz -…