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Dear CellScopes Team,
I encountered an error while running the subset_fov function for VisiumHD data using the following code:
`df = cs.subset_fov(hd, [89,109], 26, 20)`
Here is the error messa…
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Hello there.
I am trying to see if I can add support for reading (and eventually writing) Tiff images using tensorstore. The motivation is to be able to read/write large OMETiff images. Initially I a…
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I am trying to debug an issue and I noticed another python module that I am using (https://pypi.org/project/scanimage-tiff-reader/), only throws errors on OME-TIFFs that I save through ImageJ(1.53q) r…
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hello,the original svs has 5 level 80X 40X 20X 10X 5X ,how to make the ome.tiff save 20X rather 80X
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Hello!
Is it possible to add support for generating "indexed" OME TIFF file output? I'd like to generate some test data for use with the Viv system (specifically the Avivator web viewer) and this p…
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I have an RGB image with shape `(15840, 28800, 3)` (i.e. axis order `YXS`) - I'm attempting to generate the `ome-xml` for this file by passing in the following parameters - note that this is after res…
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Plane tags are not mandatory in OME XML but they can contain very sensitive informations such as time, XYZ position and exposure time.
When an OME Tiff file is cropped, saved and then re open. Plane …
hadim updated
10 years ago
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We are having some trouble with the resave function in Multiview Reconstruction.
I have a dataset acquired with our OpenSPIM setup which consists of one time point and 12 angles (each angle being 2.6G…
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In the ome.tiff metadata the pixel type is "float" while numpy conversion is np.float32.
```
$ ashlar Cycle0.companion.ome Cycle1.companion.ome -c0
Stitching and registering input images
Cycle 0…
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Hi,
I need to load large images, each one larger than 2GB. The normal loading time is approximately 9 minutes, but I suppose I could achieve better performance. Reading some other posts, I found th…