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The ordination figure would be a lot more useful if there were some way to link points in the figure with points on the ground. This could be as simple as preserving coordinates / IDs and outputting s…
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https://hackmd.io/9ORFRJGaTOiOdEAY-Aih2A?view
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# open lab / Sat + Monday , Jul 20 & 22, 2024 / STAMPS 2024
Suggestion for open lab:
* run the commands below on the "canned" data;
* diagr…
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Hi,
This is again probably a simple issue but is there a way to get the row names/numbers from the sample data section of the phyloseq object as a label for data points in ordination plots?
Thi…
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Dear all,
I would like to ask a question about pre-processing data using phyloseq.
My original phyloseq object contains 9475 taxa and I used the following commands to filter it:
total = media…
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Hi,
I've plotted bray-cutis beta diversity (PCoA) and need to change the labels. I've done this for other plots in ggplot using a code like this:
```{r}
relabunbray.ord$Site
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**Describe the bug**
On this page: https://docs.nosqlbench.io/reference/versions/nb-version-info/#version-info the version referred to is:
```
version=5.17.2-SNAPSHOT
groupId=io.nosqlbench
artifa…
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```
Could you offer an option in view clusters, to colour the clusters in
ordination space. This rendering is often used for GDM model results.
So from a dissimilarity matrix for the currently sele…
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Hi!
I have a couple of issues/questions, for which I can't seem to be able to find an answer browsing through everything.
1) I am using plot_ordination to generate an NMDS plot on my data, I wou…
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I was trying to rearrange the order of my legend in a phyloseq ordination plot and was having no success. I tried using + scale_fill_discrete() which has worked on other phyloseq plots, but it doesn't…