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Hi,
When I implement the second case,I have a problem:
Why we should flip label image around y axis ? Because I find that the label of pancreas correspond to the abdominal cavity image,but when …
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The ontology expansion and so the colouring of parent structures for cell types across images in the pancreas anatomogram stack is a bit patchy:
In none of the experiments below 'pancreatic acinus' s…
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I attempted to use ROBOKOP to answer the MCAT question below.
**MCAT Question**
Steatorrhea is the presence of increased fat in feces. Which organ is least likely to be the cause of a patient’s st…
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Create datasets that can be used for consistent DeepSSM benchmarking.
Training data must include:
- Original and groomed images
- Original and groomed shapes (meshes or binary segmentations)
- …
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ValueError: Input 0 of layer dense is incompatible with the layer: expected axis -1 of input shape to have value 4096 but received input with shape [None, 1].
When I run the scIAE with the test data,…
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Just recording this ... David / Heather on Slack just found this:
Record your basal schedule before you do this. To reproduce… [Settings][Autotune][Run Now], choose [Save as your normal Basal rat…
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Hi, if I want to reproduce the results in notebooks/data_analysis/pancreas.ipynb, which version of 'scArches' should I install?
Thank you in advance!
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Hi, I found out something strange when using batch correction.
These are the two result from Muraro (pancreas) and MacParland (liver) datasets.
This is from Muraro
![image](https://user-images.gith…
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tasks:
- [x] market_basket analyses
- [x] differential analyses between all 3
- [x] directionality analyses -> necessary in our case?? do not see use at the moment
- [x] finding biological in…