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Hi,
Thanks for your work on this tool-just found it in a search for prophage annotation pipelines and I like your approach versus the other tools in the field. Some request that would make it easie…
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Hi there,
I was wondering what the correct paramaeter for the metagenomic option is? I asks for an interger so should I just put "--meta 1".
Also specifying the -j flag doesn't seem to change a…
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Hi
This is a great tool, all steps work fine. However, I am not able to download the prophage sequences in fasta-format. The double-stranded DNA icon for BLAST works perfectly alright. But, the verti…
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In case anyone is interested in helping with this https://github.com/replikation/What_the_Phage/issues/88
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Error running version phigaro 2.2.4-1:
```
$ phigaro -c config.yml -f test.fna -o out/${SLURM_ARRAY_TASK_ID} --not-open -e tsv -d
Traceback (most recent call last):
File "/global/home/users/sn…
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I've run into the error when using the -c option (to avoid running the setup script):
```
$ phigaro -c config.yml -f $FNA -o out/${SLURM_ARRAY_TASK_ID} --not-open -t 4 -e tsv
Traceback (most recent…
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Hi there!
Thank you to develop this kind of software! I've already successfully got the results using the Bacillus genome that you provide here, but now I am trying to use it with a multifasta of ~…
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Currently, most prophage detection programs can only be run using command-line interface. There are only 2 or 3 that can be done on other web servers. This particular tool takes raw genomic sequences,…
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Hello,
while testing phigaro-2.2.1 I encounter the following problem
```
[gensoft@e211aa82115c 0.2.1.8-3]$ phigaro -f ../../datas/phigaro/Bacillus_anthracis_str_ames.fna -o out.phg -p --not-op…