-
Dear @jhcepas,
I want to list the terminal and non-terminal nodes for the NCBITaxa tree. Since the tree is an independent object and not part of the PhyloTree class, there is no function to do so. …
-
I noticed that `ClusterNode` and `ClusterTree` alias do not have `name` arguments but they do have a `.name` attribute that can be set. Is this intentional?
Would it be possible to add the name …
-
-
In this [example](https://observablehq.com/@stevenweaver/ngs-copy-diversity-with-phylotree-1-0-0?collection=@stevenweaver/phylotree-utilities) you change the size of the bubble based on the number of …
-
Hello,
I'm trying to run iqtree with two partitions, one nucleotide alignment and one binary data. I created the nexus file as following:
#nexus
begin sets;
charset part1 = novo_dataset.uniq…
-
##### What are you trying to accomplish?
Improve the Phylogenetics API and code style.
##### What is the error or issue?
The code is not using a number of Python's best practices.
##### …
-
Following our discussion with @nekrut , I am creating an issue to outline essential components for creating a barebones HIV (or other short RNA virus) genomic analysis pipeline.
Key steps for ampl…
-
I have several unrooted phylograms that I would like to present in the same figure, all with the same scaling/scale bar. Is this possible? At the moment I have several phylograms, each with a differen…
-
When zoom is enabled, the tree size can be zoomed but the picture remains clipped to the original limits. This is probably because the size of the SVG container is not updated. Updating the container …
-
Hi there, I am trying EDCluster with iqtree, following https://github.com/dschrempf/EDCluster. Iqtree runs OK with udm under 128 (eg. udm_hogenom_0128_none_iqtree.nex, udm_hogenom_0128_lclr_iqtree.ne…