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Hello,
I am trying to run circlehunter for Plasmodium Falciparum. I created a size.chrom.bed file where it contains the chromosome names and their sizes. Where I received an error. I checked the MA…
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Multiple users have problem running Companion with Leishmania mexicana. I have found the issue has been first reported in the [repo for standalone version](https://github.com/sanger-pathogens/companio…
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Hi,
I was going through the tool and the article of mHiC and found that it could be the best suited tool for the polyploidy genomes with extensive repeats. Did you all also check the tool over plan…
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Hi Joao,
Is that possible to run MapSeq with green genes, rdp or silva taxonomy databases?
It seems like they have a different format.
If so, could you please update the readme file as well?
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In the following, a build manifest is considered to be a file with one line per file, and to contain at the minimum:
* iRODs path
* Sample ID (Oxford code or ROMA ID)
* Alfresco study code
* NCBI …
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I was going through one of the [papers](https://www.nature.com/articles/s41467-023-40883-w) that uses CellRanger in Plasmodium and it says(See section `Single-cell sequencing and data processing`):
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See
https://github.com/OHMI-ontology/OHMI/issues/1
- alpha-1-acid glycoprotein concentration in mg per dL
- ferritin concentration in ng per ml
- iodine concentration in ug per L
- lead concent…
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I produced nested PRGs (`--min_match_length`=7, `--max_nesting`=5) from multiple sequence alignments of plasmodium genes and found that `make_prg` can produce ambiguous PRGs.
Here's an example I…
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@JHlozek is looking into the best parameters for the ZairaChem distillation of Olinda
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I made a strange observation. When I see the PlasmoDB gene Database, I see that there are `5254` genes but when using Biomart, I get only `4903` genes. Various characterized genes such as `"PBANKA_010…