grimbough biomaRt issues

grimbough / biomaRt

R package providing query functionality to BioMart instances like Ensembl

https://bioconductor.org/packages/biomaRt/

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issues

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getLDS function query.....

#106 Shikari666 opened 5 days ago
0
Error in req_perform(useast) : Failed to perform HTTP request.

#105 satish1907 closed 1 week ago
4
Query ERROR

#104 Struggle-Lee opened 1 month ago
7
Chromosome name filter doesn't recognize letters and numbers

#103 rbutleriii closed 1 month ago
1
SEC_E_CERT_EXPIRED

#102 WhalleyT opened 2 months ago
0
getBM(attributes="minor_allele") returns results "NA"s

#101 Nerissa-258 opened 3 months ago
0
Error getLDS()

#100 Kan-E opened 3 months ago
2
Error choosing mirror

#99 Merguerrero opened 3 months ago
0
Error accessing biomart

#98 SamTah opened 3 months ago
0
More robustness against ensemble errors

#97 Mitmischer opened 3 months ago
0
Wrong results returned for queries of multiple genes

#96 Mitmischer opened 3 months ago
0
Unable to download non-reference genome.

#95 raymondconor21 opened 3 months ago
0
Unable to use biomaRt

#94 NTherrien93 opened 5 months ago
1
Feature request: Add 'host' argument to useEnsemblGenomes()

#93 hpages closed 4 months ago
1
ensembl_peptide_id_version in zebrafish?

#92 marwa38 opened 6 months ago
0
Expired Certificate - useEnsembl

#91 hb-cy closed 7 months ago
0
dump error

#90 abrionne opened 8 months ago
2
biomaRt::select throws Error in `collect()`: ! Failed to collect lazy table

#89 ChangqingW closed 8 months ago
7
Bacterial genomes mart

#88 phisanti opened 9 months ago
0
Possible SSL connectivity problems detected: How can I possibly fix this?

#87 Shrishtee-kandoi opened 9 months ago
1
how to convert cpg id's to genes using biomart in R

#86 reem0331 opened 10 months ago
0
Error: biomaRt has encountered an unknown server error. HTTP error code: 502（404）

#85 AndoYutaro opened 11 months ago
1
Error in curl::curl_fetch_memory(url, handle = handle)

#84 powerhorse1986 opened 11 months ago
0
Non protein_coding biotypes

#83 AHinsu opened 1 year ago
0
Error: biomaRt has encountered an unknown server error. HTTP error code: 404

#82 hyjforesight opened 1 year ago
1
Possible SSL connectivity problems detected.

#81 rubie7109 closed 9 months ago
2
"Possible SSL connectivity problems detected:

#80 Charl-Hutchings closed 9 months ago
1
unused argument (feature_symbol = "external_gene_name")

#79 ryf0810 closed 1 year ago
1
"Possible SSL connectivity problems detected."

#78 dvg-p4 closed 9 months ago
1
GEDI package

#77 Maryan12m opened 1 year ago
2
WISH: Handle cache race conditions (e.g. "Multiple cache results found.")

#76 HenrikBengtsson closed 1 year ago
4
DESCRIPTION: URL and BugReports

#75 HenrikBengtsson closed 1 year ago
1
Multiple `ensembl-marts-109` entries in biomaRt's cache break biomaRt:::.listEnsembl()

#74 hpages closed 1 year ago
4
How to obtain actual position of all CpG sites in GRCm38 mouse genome?

#73 kaanokay opened 1 year ago
0
Argument "host" is missing, with no default using `useEnsembl`

#72 ferygood opened 1 year ago
0
Updated needed to posted XML?

#71 grimbough closed 1 year ago
1
Ensembl site unresponsive, trying useast mirror

#70 Shicheng-Guo opened 1 year ago
1
Error with getBM with certain attributes ("go_id")

#69 licmn opened 1 year ago
1
Support for SurePrint G3 Human Gene Expression v3 8x60K Microarray Kit

#68 SamThilmany opened 2 years ago
0
Error in curl

#67 Rom1M closed 2 years ago
1
Error getLDS() - Error in attributes(.Data)

#66 saphir746 opened 2 years ago
5
fix partial argument matching and bfcremove error

#65 LiNk-NY closed 2 years ago
1
`.listMarts` not working when host argument changes

#64 LiNk-NY closed 2 years ago
3
getLDS Error

#63 ESUIT-SU closed 2 years ago
1
Missing link of numbers of Orthologs between mouse and human

#62 tt342400 closed 2 years ago
1
biomaRt error in converting mouse to hg gene orthologs

#61 pallavisurana1 opened 2 years ago
15
Error in textConnection(BioMartVersion) : invalid 'text' argument

#60 sigven opened 2 years ago
6
Recent problem with Ensembl: "object 'err_msg' not found"

#59 cemmeydan closed 2 years ago
3
biomaRt::getBM can't parse attributes from plants.ensembl.org archive

#58 edoardobertolini opened 2 years ago
0
Error in curl::curl_fetch_memory(url, handle = handle) :

#57 zillurbmb51 opened 2 years ago
0