malariagen fits issues - Githubissues

malariagen / fits

File tracking system for group DK

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Use subtrack instead of irods

#67 magnusmanske opened 5 years ago
0
Should we change ownership on Richard Durbin studies?

#66 podpearson closed 5 years ago
3
Notebook exploring whether study changes in SequenceScape propagated …

#65 podpearson closed 5 years ago
0
missing legacy library IDs

#64 tnguyensanger opened 5 years ago
1
Exploration of whether files accessible via mlwh are all in subtrack

#63 podpearson closed 5 years ago
0
MLWH/Subtrack-only import

#62 magnusmanske opened 5 years ago
19
Data on library IDs and study are missing while present in mlwh

#61 amakunin opened 5 years ago
0
Samples without files are not tracked

#60 amakunin closed 5 years ago
3
note reorg

#59 magnusmanske closed 5 years ago
3
Determine files for which we have information only from iRODS

#58 podpearson opened 5 years ago
1
Separating "notes" into a table, and use adapted code

#57 magnusmanske closed 5 years ago
2
Decision on making FITS redeployable from scratch

#56 podpearson opened 5 years ago
21
Fix other taxon IDs

#55 podpearson opened 5 years ago
0
Fix taxon IDs 62297 to 62323

#54 podpearson opened 5 years ago
0
Fix missing taxon IDs

#53 podpearson opened 5 years ago
0
Update How_to_build_a_manifest.md

#52 podpearson closed 5 years ago
1
Add historical context to manifest creation doc

#51 podpearson closed 5 years ago
0
Richard to create Pf manifest

#50 podpearson opened 5 years ago
1
Decision on whether to apply solaris-vs-mlwh differences to mlwh

#49 podpearson opened 5 years ago
0
Decision on whether to keep mlwh/iRODS and FITS in sync

#48 podpearson opened 5 years ago
0
Update How_to_build_a_manifest.md

#47 podpearson closed 5 years ago
1
Update README.md

#46 podpearson closed 5 years ago
1
Update database_design_v1.md

#45 podpearson closed 5 years ago
1
Populate Alfresco study using sequencescape-alfresco study mapping file

#44 podpearson opened 5 years ago
8
MalariaGEN sample ID tag?

#43 podpearson opened 5 years ago
2
Add source column to tag table

#42 podpearson opened 5 years ago
2
Samples missing sample accessions

#41 podpearson opened 5 years ago
0
Files with no sample_supplier_name in iRODS metadata

#40 podpearson opened 5 years ago
0
Moving the system to a public cloud

#39 magnusmanske opened 6 years ago
0
Web front end

#38 magnusmanske opened 6 years ago
0
Command line query tool

#37 magnusmanske opened 6 years ago
0
Expanding the scope to include pipeline outputs, e.g. release files

#36 magnusmanske opened 6 years ago
0
Expanding the scope to include human data

#35 magnusmanske opened 6 years ago
0
Expanding the scope to include amplicon sequencing data

#34 magnusmanske opened 6 years ago
0
Sequencing not done at WSI

#33 magnusmanske opened 6 years ago
0
Use case: Manually alter FITS mappings

#32 magnusmanske opened 6 years ago
2
Use case: Update the file tracking database with the latest from Multi-LIMS warehouse/baton (iRODs)

#31 magnusmanske opened 6 years ago
1
Use case: Create a detailed BAM/CRAM manifest file with metadata, based on species common names

#30 magnusmanske opened 6 years ago
0
Use case: Determine how many samples have been sequenced, broken down by species

#29 magnusmanske opened 6 years ago
6
Use case: Determine which samples from a given study have been sequenced

#28 magnusmanske opened 6 years ago
3
Some samples are missing oxford codes but they exist in solaris.vw_samples

#27 tnguyensanger closed 5 years ago
3
Use case: Create a build manifest given a set of sequencescape IDs, oxford code/ROMA IDs or Alfresco study codes

#26 magnusmanske opened 6 years ago
3
Use case: Create a build manifest containing all samples from a species

#25 magnusmanske opened 6 years ago
3
Write documentation for fits command line tool

#24 magnusmanske opened 6 years ago
2
Minor changes to mvp doc

#23 podpearson closed 6 years ago
0
Wrong ENA sample accession given to some samples

#22 tnguyensanger opened 6 years ago
5
Investigate discrepancies between files and Quan's list of submissions

#21 podpearson opened 6 years ago
2
Some anopheles samples missing alfresco study

#20 tnguyensanger opened 6 years ago
5
Human Burkina Faso samples missing oxford codes

#19 tnguyensanger opened 6 years ago
1
vw_pivot_file.alignment_filter column sometimes different from IRODS

#18 tnguyensanger closed 6 years ago
6