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Started from discussion on https://github.com/pombase/website/issues/2042
## Summary of what we discussed today
* Cons of current system:
* File naming and organisation might be improved
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(From pombase/curation#3465)
Add a message like this when there are existing HTP annotations for a paper:
```
This publication has NNNN existing annotations from high throughput experiments.
T…
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Seems @manulera came up with https://github.com/manulera/ontology_viewer which looks like its doing a subset of obographviz, outputting pretty github embeddable mermaid graphics:
https://github.co…
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While curating this paper - PMID:32243490 - I noticed that they named SJAG_03891 as Alx1, but the database name is Rim20. What should we do about it?
Thanks!
S.
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Dear all,
The proposal has been made to obsolete
GO:0034471 ncRNA 5'-end processing No direct annotations (children have been rehoused)
GO_0034661 ncRNA catabolic process No direct annotation…
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https://www.pombase.org/reference/PMID:25428589 (**nc-tgp1** transcriptional gene silencing by lncRNA)
uses heterochromatin assembly, and surveillance together to silence genes "pretranscrptionally"…
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part_of relation missing between SNAP receptor and membrane fusion.
https://user-images.githubusercontent.com/7359272/92286477-15eac500-eeff-11ea-9c85-c509f13a23a2.png
https://github.com/pombase…
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when we discussed
https://github.com/pombase/pombase-chado/issues/1019
we talked about reporting the changes in 5' UTR overlaps in the publication (I need to check what has been published on thi…
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This is_a transmembrane transport, but there are 2 pathways for heme acquisition
one via transmembrane transport, and one via endocytosis
reviewed in
https://www.pombase.org/reference/PMID:321…
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cc @ValWood
Looking at the following terms:
abolished protein localization to eMTOC (FYPO:0005700)
normal protein localization to eMTOC (FYPO:0005707)
decreased protein localization to eMTOC …