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### Describe the workflow you want to enable
The maximum of F1 across thresholds is a well-studied metric and it is both robust and valid in binary and multilabel classification problems. Basically,…
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I'm trying to generate a model using a map generated in cryosparc and protein fasta file. The process runs through the Initial C-alpha prediction phase and then terminates, leaving behind an empty out…
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I am reading the biorxiv preprint and I understand I could use the CARP models to predict/calculate stability and melting temperature from a query protein sequence? Would it be possible to have a util…
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https://pythonclock.org/
print function
xrange to range
many things now return iterators/generators vs. list objects.
etc., etc.
2to3 script can help
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Input MSAs were truncated to be a single entry (duplicates of the input sequences) because leaving `msa:` blank causes errors for some reason.
```
>101
MGDWSALGRLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESA…
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What are some open datasets for evaluation? These will be needed to answer #3 about hyperparameters and algorithms
cc @andrenguyen
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As we are introducing variant and study entities (and potentially locusToGene), metadata for them no longer should be stored in the evidence object. However other fields like l2g and credible sets are…
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It would be great to have a clear distinction between "original" and derived features together with a method to retrieve the function for calculating derived values. I will take the protein corona dat…
ghost updated
7 years ago
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Hi Vadim,
I have been using Dia-NN through FragPipe to analyze custom PTMs (one is in UniMod but the other is not). I managed to run it but PTMProphet has to be disabled because it has an issue wit…