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We need to allow users to display, alongside RHS compounds, the most appropriate protein. This could either be:
1. an uploaded conformation - that's covered in #1222 spec
2. the most appropriate LH…
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**Use case:** - Grouping cell markers irrespective of whether they are recorded as gene, transcript or protein.
**Justification:**
'has plasma membrane part' is defined by the presence of a prot…
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Hi @a-r-j Happy 2023, I wish you great success with graphein and more!
I am trying to build a protein mesh with surface descriptors (e.g. hydrophobicity).
As an example, like what [HTMD from Ace…
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Add a search to retreive all signal peptides. None urgent
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how can one mark the position or contribution of a particular residues or get the residues responsible for a surface property from surfmap 2d plot
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The the following ligand symbol and receptor symbol in file `lrc2p.csv`, which is weird.
![aa](https://user-images.githubusercontent.com/33725620/160731801-fbef020c-79c3-4a24-abcd-67058814d991.png)…
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and ('has plasma membrane part' some 'urokinase plasminogen activator surface receptor')
The mechanism is different in teleost so this is not a true statement PMID 22733817
and ('has plasma m…
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Hi,
Near Residue R181 (colored in orange)
https://github.com/schrodinger/pymol-open-source/assets/8821384/286574d7-92f6-40c3-8efd-59ced6470542
the SES surface for protein 7BK1 (pdbid) comp…
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Anything I didn't think of?
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I just wanted to repost the notes on what goes into a "typical protein:ligand setup pipeline" from our meeting at MolSSI on 8 Oct 2016.
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# Contributors
* John Chodera
* Julien Michel
* Peter…