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For a project that I'm working on I am leveraging several protein sources (NCBI Nuccore, UniProt, SwissProt, etc.). I have seen that Biopython offers some functionality with Entrez for NCBI. Is ther…
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These are CAAX box proteins:
Farnesyltransferase recognizes CaaX boxes where X = M, S, Q, A, or C,
and a is aliphatic
- SPAC24B11.10c cfh1 chitin synthase regulatory factor-like Cfh1 (predicted)…
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- The issue is related to the user-provided proteins feature and its associated issues.
- I am trying to use bakta to perform annotation on a phage predicted protein file that used Phanotate. I wa…
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- Main topic: The candidate will develop, conduct, publish, and communicate research at the intersection of migration and ageing. Related topics of interest may be health and/ or technology.
http…
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In the published models (especially those using the "European (P-gp modified, CYP3A4 36 h)" individual), I found some differences in the expression profiles from the values stored in the database.
…
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Is there a way to have this library give me score for double and triple mutants?
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Dear authors of cellphoneDB, first of all, thanks for this very very useful tool!
I am using it to evaluate ligand-receptor interactions among different annotated cell type a scRNAseq dataset.
I am …
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Hi tfold team,
I applied tFold-ag to the AbDB dataset, and while it performs well on some proteins, I encountered difficulties predicting other proteins. Upon inspecting the predicted structures, …
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### Setup
Biopython 1.7.0, Python 2.7.13, and Mac OSX 10.12.6
I am trying to run the MEME parser on a file with protein motifs, but it returns a KeyError with 'X'.
The protein motifs occasional…
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Hi!
Trying to run your tool I have an error message saying:
```
Error in rule proteins:
jobid: 6
output: proteins/test_protein.faa, proteins/test_prodigal.gff
conda-env: /PULpy/.sn…