-
I am currently looking to call very small minor variants (e.g. less than 1%) using super deep HiFi data with ~8000 coverage for pseudomonas aeruginosa, is deep variant appropriate to use in this case?…
-
The following regular expression/s should allow (a) validation and (b) controlled correction of errors in the creation of tip labels in `ami-phylo`
```
…
-
As will be discussed in #66 there have been two new structures deposited:
Nov 2021: _Pseudomonas aeruginosa_ MurD, SSGCID code [PsaeA.17938.a](https://apps.sbri.org/SSGCIDTargetStatus/Target/PsaeA.…
-
Hi all!
### Some background info:
For my project I have managed to modify the AZ hit compound, AZ5595 by adding a primary amine to the ethanolamine moiety. I surmised that it's the best place to…
-
I'm trying to run snippy-multi for a few assembled genomes.
73 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/73.fasta
75 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/75.fasta
95 /xulie/shiyanshijiyuanfenxi/ji…
-
Meeting time: Tue Oct 5th 2pm London
Location: https://ucl.zoom.us/j/98356058106
Recording: https://youtu.be/6hqsapouJEU
Meeting follows on from #49 and #50
Mur ligase minutes
1) Laura XChem …
-
Command:
```
nextflow run main.nf -resume -profile docker,test_bacteria
```
```
WARN: Input tuple does not match tuple declaration in process `ORTHOFINDER_GO` -- offending value: [/excon/data/b…
-
**Date**: Oct 11th 2022
**Time**: 2pm UK time ([other times](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2022&month=10&day=11&hour=13&min=0&sec=0&p1=43&p2=136&p3=37&p4=771&p5=235&…
-
As you can see from the log below - seems like GOTTCHA is throwing warnings about Use of uninitialized value $readcount ... etc etc etc.
This is just an FYI. I'm sure this is an easy fix, but it tak…
-
Q: How many sourmash hashes does it take to classify a genome uniquely?
If the answer is 1, then there is a single hash that identifies this specific genome! :tada:
If the answer is “you cannot…