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Hello Ratatosk Team,
I have short reads in 2 file 01_R1.fastq and 01_R2.fastq for example. How should I offer them to -s ? they have the same fastq sequence name (fastq header) for each sequence ex…
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Hi
I was wondering if we are able to run ref guided correction locally. I do have access to required CPU #'s and RAM on 1 single machine..
Thanks a ton
Cheers
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I've been using pepper to polish 2.7gb mammalian genomes assembled with recent ONT reads with pretty good success. I tried repeating the assembly + polishing steps with Ratatosk corrected ONT reads. T…
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Hi,
So I am trying a little bit of a peculiar setup in which I am using ONT corrected reads (with [Ratatosk](https://github.com/DecodeGenetics/Ratatosk)) to call variants with DeepVariant 1.1 in di…
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Hi,
first, thanks for your software!
We have both sr paired end and single long ONT reads, so we want to try Ratatosk for our viral data:)
I've tried this command:
```
./Ratatosk \
--in-…
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Dear developers,
We have ~30x coverage of Nanopore PromethION data from a heterozygous invertebrate with a large genome (18Gbp). We also have approximately 30-40x coverage of 10X Chromium Illumina …
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Dear developers,
We are working on a large dataset (600Gbp / 84 million long-reads and 3 billion short-read pairs) for a large, fragmented and repetitive genome assembly (data described in more det…
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Hi there
I wanted to try the pipeline on some insect data (Illumina + ONT reads).
I seem to have problems to use your conda yml file for ONT. I am getting this error:
Solving environment: fai…
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correct path:
https://github.com/squirrel-labs/GameLobby/blob/master/src/resources/icon_skribbl.png
js console output:
GET https://github.com/squirrel-labs/GameLobby/blob/master/WebInterface/dist/…
vlle1 updated
3 years ago
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Hi!
I am trying to run Ratatosk on a diploid arabidopsis genome from the FALCON paper: https://www.nature.com/articles/nmeth.4035. Haploid genome size is ~140 Mb, and heterozygosity rate is ~1%. Th…