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VGP
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vgp-assembly
VGP repository for the genome assembly working group
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Database used for running kraken2
#84
foreignsand
opened
2 weeks ago
0
telomere prediction
#83
amit4mchiba
opened
1 year ago
1
BLAST options error: File .fasta does not exist
#82
Xnisongurumayum
closed
1 year ago
11
Problem install conda environment
#81
gubrins
closed
1 year ago
4
Pipeline for Polishing Canu assembly with Illumina Reads
#80
iek
closed
1 year ago
1
creating folder with tools configured for galaxy
#79
Nadolina
closed
2 years ago
0
updating branch
#78
Nadolina
closed
2 years ago
0
adding BSD-3 clause to parse_mito_blast + creating dir for tools deve…
#77
Nadolina
closed
2 years ago
1
multiple updates
#76
Nadolina
closed
2 years ago
1
remove test fun. + add endline
#75
Nadolina
closed
2 years ago
0
Update parse_mito_blast.py
#74
Nadolina
closed
2 years ago
0
Possible missed documentation -- haplotype merging step
#73
DustinSokolowski
closed
2 years ago
4
edits to parse_mito_blast
#72
Nadolina
closed
2 years ago
0
add shebang to parse_mito_blast.py script
#71
bgruening
closed
2 years ago
1
Revert "parse_mito_blast folder created"
#70
Nadolina
closed
2 years ago
0
parse_mito_blast folder created
#69
Nadolina
closed
2 years ago
0
introducing setup.py
#68
Nadolina
closed
2 years ago
0
change column order
#67
Nadolina
closed
2 years ago
0
adding tests
#66
Nadolina
closed
2 years ago
0
add help
#65
Nadolina
closed
2 years ago
0
Adding VGP decontamination pipe.
#62
Nadolina
closed
2 years ago
0
mitoVGP crashes on start
#61
mcurto
closed
2 years ago
4
Clarification in documentation: Polishing phased assemblies
#60
DustinSokolowski
closed
2 years ago
4
Runtime?
#59
ilante
closed
2 years ago
1
plant mitochondrial genomes?
#56
romseg
closed
2 years ago
6
mitovgp trimmer failing
#55
Astahlke
closed
3 years ago
2
updated readme
#54
pickettbd
closed
3 years ago
0
QUESTION: Does mitoVGP need pacbio RAW data (BAM) files as input?
#53
cement-head
closed
3 years ago
3
mitoVGP crashes on start
#52
cement-head
closed
3 years ago
8
asset bionano problem
#51
zhoudreames
closed
3 years ago
2
genomescope evaluation
#50
zhoudreames
closed
3 years ago
7
10X align
#49
zhoudreames
closed
3 years ago
3
error in Asset
#48
zhoudreames
closed
3 years ago
3
Chromosome status estimation
#47
zhoudreames
closed
3 years ago
8
Sex chromosome assembly
#46
zhoudreames
closed
3 years ago
3
how to use DNAnexus Workflow to assembly genome
#45
zhoudreames
closed
3 years ago
4
time of running MITOVGP
#44
Niloofar-Alaei
closed
3 years ago
36
conda install ONT environment fails
#43
estolle
closed
3 years ago
5
WDL workflow for assembly scaffolding
#42
tpesout
closed
4 years ago
1
Ehch
#41
edgarhernandezch
closed
4 years ago
0
use `histogram` not `print`
#40
arangrhie
closed
4 years ago
0
avoid unnecessary bam compression/decompression
#39
mcshane
closed
5 years ago
0
Update polish
#38
Arkarachai
closed
5 years ago
0
trimming applet for Bionano hybrid scaffold results
#37
Arkarachai
closed
5 years ago
1
Scaff10x v4.1
#36
msimbirsky
closed
5 years ago
0
Update Bionano apps
#35
msimbirsky
closed
5 years ago
7
Update bionano scaffold outputs to be gzipped
#34
msimbirsky
closed
5 years ago
0
Update Salsa to V2.2 in Scaffolding workflow
#33
msimbirsky
closed
5 years ago
0
update version to use app with higher memory
#32
Arkarachai
closed
5 years ago
2
Unzip feb2019 update
#31
Arkarachai
closed
5 years ago
0
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