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![image](https://github.com/user-attachments/assets/2b304d57-c7cb-46bb-87af-73d4105617e2)
![image](https://github.com/user-attachments/assets/6e3ef665-92df-49fe-a0af-0d2af99179bb)
tree: https://next…
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Here's a bit of the cophylogeny at the start of the long ARG: sc2ts tree on the left
and here it is at pos 22000:
Although there are only 5 or so recombinations in the simplified ARG, on…
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We need to do a 'true' power analysis for readcomb - we know it detects phase changes, but how often do we expect it to actually catch them in real data?
We've looked into [ART](https://academic.o…
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1. version is at the middle along with “V” Preparations – to be placed at the top.
2. Do we need the RxNorm code in the string also? – “Abacavir (190521) (2006AC-2022AA)”. It is in the tooltip.
3. A…
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# Genestorian: An Open Source web application for model organism collections
## Participants:
Project Lead: Manuel Lera Ramirez @manulera
Mentor: Sam Haynes @DimmestP
## Vision
### The…
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**Description**
**Sub-lineage of:** KP.X (unclear)
**Earliest sequence:** 2024-7-9, USA, New York – EPI_ISL_19277804
**Most recent sequence:** 2024-8-3, Canada – EPI_ISL_19330042
**Continents circ…
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I want to write documentation about how the algorithm works (ex. [run.md](https://github.com/phac-nml/rebar/blob/main/docs/run.md)) with a case study. SARS-CoV-2 recombinant `XD` often confuses me, so…
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Hello,
Is there some way to track in which branch of the tree/lineage a given recombination break (given in -b or -f output files) occurs?
I ask because I am specifically interested in identifyi…
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In our preprint ARGs, the Pango lineage assignments of the sample sequences was produced by the NextClade tool. However, the consensus-based mutation definitions from the COVIDCG website, which were u…
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Good source detailed info about types: [Vaccine Types](http://www.niaid.nih.gov/topics/vaccines/understanding/Pages/typesVaccines.aspx)
This is important information - and will require multiple types…