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I am running ORFanage for a few selected genes (FUCA2 RSF2 BAG3 ZFAS1):
Subsets the CCDS source for these genes
```
grep -e FUCA2 -e SRSF2 -e BAG3 -e ZFAS1 /biodb/genomes/homo_sapiens/GRCh38_102/…
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Dear Developers,
This issue is likely related #157
In `create.experiment()`, when `pairedEndBam = TRUE`, then the following fourth row is NOT created.
```
"libtype","stage","rep","condition"…
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Hi Mike,
I am running riboviz nextflow pipeline on human ribose data (SE 50 bp ~1.8 gb). The "generateStatsFigs" process is taking too long (2 days and still running), is it because of R?
Then …
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Hi,
Thank you for making this helpful package and hope this can be a unifying tool!
I am currently following the Ribo-seq vignette to load some Ribo-seq data
https://bioconductor.org/packages/r…
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- [ ] ned1 as per PMID:26774782
The second
annotated 150bp-long intron is retained, resulting in insertion of additional 50
amino acids in a region between the N-lipin and HAD-like domains
old
…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zslastman/Ribostan
Confirm the following by editi…
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Seems that version 5.5.4 of meme is broken since I am getting weird results when trying to run `sea`. 5.5.5 original docker image works with the same command, but that cannot be used in nextflow, sinc…
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### Description of feature
### Description of feature
This issue is recreated from @JackCurragh's module plan (the issues wouldn't transfer over).
Here is attempt to break down the required/desir…
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Hi,
I am using the below command to generate a metaplot for CDS regions-
PlotMetageneAnalysis -i output_prefix/Riboseq_all_CDS_normed_dataframe.txt -o output_prefix/Riboseq_all_CDS_normed -g Ctrl,T…
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Hi, was trying to use ORFik for my riboseq analyses, i encounter this error when running ORFikQC.
Using R 4.2.2, ORFik 1.18.2, window10
```
riboExp Saving, ofst files to: transcript.bam/ofs…