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`README.md` is kind of generic about ribosome profiling, rather than specific about RiboViz. We should emphasize that RiboViz:
* is a **transcriptome-centric** pipeline, which makes it unusual
* i…
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Artem
- [x] Create a 'generic' template page for RPS/RPL genes
- [x] Population generic templates page with links to external databases
- [x] Create a 'useful links' page with ribosome/RNA modifica…
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inspiration: Stein Aerts class
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Hi, I used rmats to analyse my RNAseq data, and it worked perfectly, thanks.
I am now trying to use it to analyse my RNAseq data from ribosome bounds fragments, meaning the read lengths I'm interes…
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This task has two steps:
- [x] Complete and merge initial notebook, started in the PR #57 by [luis-sribeiro](https://github.com/luis-sribeiro).
- [ ] Adapt this notebook to showcase how to simulate …
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* **UniProt KeyWord (ID and label):**
GO:0006413 | translational initiation | IEA with UR000107015 | GO_REF:0000104 | 57
and
GO:0003743 | translation initiation factor activity | IEA with UR00010…
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Hi! I'm trying to make a simple macro called `unless`, which generates `if not expr:` line, but it's not quite clear how to do it with ribosome.
My attempt is:
```
#!/usr/bin/env python
def unless(…
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2012-03-30 William A. Meza:
This term would go under the Growth Phenotype node
Definition: "Translation is dependent on the presence of erythromycin due to alterations to the ribosomes"
PMID:387748
2…
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For the `tag: S` argument in link_entries, if the tag you input doesn't exist for the entry type, the error returned is:
```
{ Err:
{ Internal:
'{"kind":{"ErrorGeneric":"Unknown entry t…
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Hi, I am using the pipeline for riboseq analysis and other than a couple of slight changes (just some salmon commands), it is working fine until the riboprof section, where this error is being display…