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compSPI
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simSPI
Generative Models
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Linear sim config change - allow init_data in test_linear_simulator.py to accept yaml files
#133
qingyuan-wu
opened
2 years ago
1
Add documentation to tem_tutorial.ipynb for simSPI/path_config.yaml
#132
geoffwoollard
opened
2 years ago
4
Add documentation to tem_tutorial.ipynb for simSPI/path_config.yaml
#131
geoffwoollard
opened
2 years ago
3
Reduce the boilerplate code in test_notebooks.py
#130
bogdantoader
opened
2 years ago
1
Remove .pbd data that takes up space and download on the fly from osf for tests and notebooks
#129
ninamiolane
opened
2 years ago
0
Add Colab links to notebooks
#128
ninamiolane
opened
2 years ago
0
Removed `dryrun test` in "Test" workflow.
#127
fredericpoitevin
closed
2 years ago
1
Remove `dryrun` test - speedup
#126
fredericpoitevin
opened
2 years ago
0
Added simSPI schematics in README.
#125
fredericpoitevin
closed
2 years ago
1
Feature/ft projector (draft)
#124
lederman
opened
2 years ago
4
Projection tests?
#123
lederman
opened
2 years ago
0
Revert merge of flow generator notebook
#122
ninamiolane
closed
2 years ago
2
flow generator documentation and source code development
#121
geoffwoollard
closed
2 years ago
2
Some tests fail locally because of the "/work/" absolute path
#120
bogdantoader
opened
2 years ago
1
Notebook showing how to use LinearSimulator to generate particle images from a given volume
#119
bogdantoader
closed
2 years ago
8
Change config to linear simulator: from pickle to yml
#118
ninamiolane
opened
2 years ago
0
shukuns notebook
#117
KennethNye
closed
2 years ago
2
quick fix of tem_tutorial bug
#116
sonyahanson
closed
2 years ago
1
Make general latent space distribution metadata parser generator
#115
sonyahanson
opened
2 years ago
0
Additional instructions for setting the root_dir and the TEM simulator path in the config file for the sim_tutorial notebook to run.
#114
bogdantoader
closed
2 years ago
2
Add Flow generator from 3DFlex
#113
KennethNye
closed
2 years ago
0
add tutorial for flow generator
#112
KennethNye
closed
2 years ago
1
Implement a tomographic backprojection module
#111
fredericpoitevin
opened
2 years ago
0
Simulate spliceosomes' micrographs with the TEM simulator
#110
ninamiolane
opened
2 years ago
0
Simulate ribosomes' micrographs with the TEM simulator
#109
ninamiolane
opened
2 years ago
0
Simulate Gaba-B proteins' micrographs with the TEM simulator
#108
ninamiolane
opened
2 years ago
0
Write a notebook that simulates cryoEM images with the linear simulator
#107
ninamiolane
opened
2 years ago
0
Add PR template
#106
ninamiolane
closed
2 years ago
1
Organize simSPI's notebooks
#105
ninamiolane
opened
2 years ago
5
Implement new noise models
#104
ninamiolane
opened
2 years ago
0
Implement Shift in Image Space (Translation)
#103
ninamiolane
opened
2 years ago
1
Implement Projector in Fourier Space (Slicing)
#102
ninamiolane
opened
2 years ago
1
init linear simulator as module
#101
jedyeo
closed
2 years ago
6
Add __init__.py to linear_simulator directory
#100
jedyeo
closed
2 years ago
2
Adding dockerignore to help decrease simSPI image size.
#99
fredericpoitevin
closed
2 years ago
1
Building simSPI container workflow fails due to size limit.
#98
fredericpoitevin
opened
2 years ago
2
TEM Simulator docs on Euler angle convention
#97
geoffwoollard
opened
2 years ago
0
Luis master
#96
fredericpoitevin
closed
2 years ago
9
add more people to a list of maintainer
#95
geoffwoollard
closed
2 years ago
0
add more people to a list of maintainers
#94
geoffwoollard
closed
2 years ago
0
Improve containerization experience
#93
fredericpoitevin
opened
2 years ago
0
add more people to a list of maintainers
#92
geoffwoollard
closed
2 years ago
2
rename variable - check PR tests passing after merge
#91
geoffwoollard
closed
2 years ago
2
TEMsimulator output format compatibility
#90
fredericpoitevin
opened
2 years ago
1
Add some log information when processes are running
#89
fredericpoitevin
opened
2 years ago
0
TEM : Refactor "no of samples/microgaphs" to "no of particles"
#88
arjunsingh3600
opened
2 years ago
0
feature: tem refactoring + tutorial notebook
#87
jedyeo
closed
2 years ago
9
feat: demo dataset gen notebook
#86
jedyeo
closed
2 years ago
9
Feat: demo notebook for dataset gen
#85
jedyeo
closed
2 years ago
0
Docker image fails to update configuration files (.yaml) on push, workaround needed.
#84
calhep
opened
2 years ago
3
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