-
Hello,
I have installed MIDAS using conda command in an empty virtual environment. I also installed samtools under the same conda environment. The installation is a success. But when I execute the …
-
Hi,
thanks a lot for the development of this tool. I am trying to use smoove for a triticum genome and the program give an error saying that it cannot create a bai index for such genome size and to…
-
Hi Felix,
I’m currently running Bismark on AWS using 192 CPUs. Everything is running at lightning speed except for merging the temporary BAM files. It seems that the merging process is not utilizin…
-
Credit to @adthrasher for the idea proposed in a comment on #133
We have `DisallowedInputName` and `DisallowedOutputName`. Those should remain unchanged, but there should be a new rule that checks…
-
Dear Adam,
I hope you are doing well. I just got to know about this tool to find telomers in assembled genomes. I Am trying to run this on one of my assembled genomes but the documentation in readm…
-
Dear Authors. I have not been able to launch it.
1. The Trinity sees only left reads, it seems that only left reads are formed in fastp.
2. As far as I understand databases I can use my own, i.e. I…
-
Hi Zhigui,
Thanks for providing this nice workflow. Now I have a longread hifireads for genome assembly and I have finished step1 and step2.
The step3
bwa mem -M -R "@RG\tID:${s}\tSM:${s}\tPL:I…
-
Hi,
I had a few errors subsetting bams, because my RNA bams reference has non-chr contigs (i.e. '6' , not 'chr6') and only the main chr contigs. My DNA bam has other contigs so I still want to run…
-
Appears in dedup_sort_run_parallel.pbs but not in dedup_sort.sh.
-
I got the following error message when indrops tried to merge all bam files together. Any ideas what my problems are? Too may cells? Thank you.
[sample1] This worker assigned 3941 out of 3941 total…