-
There are 5 PROV-O terms that should be supported for SBOL in iBioSim:
1. Activity
2. Association
3. Usage
4. Plan
5. Agent
Refer to SBOL[ specification 2.1.0](http://sbolstandard.org/wp-conte…
-
Hi, how do you set the qualifiedUsages of an Activity properly?
The following piece of code does not serialize the usages of the Activity:
```
document = Document()
original_cd = C…
-
I have a valid SBOL2 file for which the converter is reporting errors incorrectly, which I believe indicates an issue in the implementation of libSBOLj's validator.
Specifically, when validating …
-
Version 1 of the SBOL specification is still used by tools such as [Benchling](https://benchling.com). Ideally, it would be possible to convert to and from SBOL version 1 as supported by libSBOLj.
-
In registryInputDialog.java, check uri being fetch to see if it is in the selected synbiohub, if not create a synbiohub frontend where it is located based on its uri prefix, using registry preferences…
-
The simplest workflow for Excel-to-SBOL is creating libraries of basic parts.
The workflow goes: create spreadsheet --> run tool --> output is SBOL document.
We need to check to make sure that t…
-
SBOL uses URI enums in a number of places, e.g., in [the draft SBOL3 OWL RDF](https://github.com/dissys/sbol-owl3/blob/main/sbolowl3.rdf):
```
…
-
The GOLDBAR:
`one-or-more((Cello_promoter then zero-or-one(Cello_promoter) then Cello_ribozyme then Cello_RBS then Cello_CDS then Cello_terminator) or reverse-comp(Cello_promoter then zero-or-one(Cel…
-
A visual protein sequence feature description language, analogous to the nucleic acid sequence feature description language of SBOL Visual, has been proposed in https://pubs.acs.org/doi/abs/10.1021/ac…
-
Discussing experiences with other users, it seems that one needs to know what OWL constructs are and are not supported in order to effectively use the sbol_factory.
As I am working on the Container…