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Hi,
I'm currently working on a protein that binds to a specific 18bp DNA sequence, supported by experimental evidence, and I'm trying to identify the conserved binding motif. However, the challenge…
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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?**
- [x] Yes
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![image](https://user-images.githubusercontent.com/90426962/215965399-5f54122c-edd1-4104-9e8b-c7da771c780c.png)
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## Problem
I am missing 2 and 3 dimensional arrays for my current project in MongoDB.
## Suggested solution
Enable 2 and 3 dimensional arrays, at least in MongoDB.
Preferably this would…
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Superfamily 2.30.300.20 - the representative domain seems to be composed of two domains (D1 + D2 suggested in the literature); one of the domains is missing 3 beta-strands (which have been chopped as …
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The score structures stage (stage 6) generates `structure_scores` files and `all_fragment_scores/frag_scores` files. Per the README and reading some of the closed github issues, the recommendation to …
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Our initial scope for this VA type was limited to assertions that a variant lay within or overlapped a specific feature in the genome (e.g. a specific gene, exon, intron, motif). However, examples hav…
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Hello, I know this is probably not a bug with the code but I was hoping someone here would know.
I intend to run this on a M1 Mac and I cannot get past the conda env create -f UFold.yml
A few thin…
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Gather observations from literature on how strains and antigen types within strains compete and are affected by immunity.
Should be some overlap with Philip's initial 1.0 mechanism for search in var…
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Hello, after running this command `python SquigglePlot.py -p /home/lab/Nano/lytic.fast5` it seems as if it is working and says "Done" but I am unable to see anything. I have tried to save .pdf and sav…