Psy-Fer SquiggleKit issues

Psy-Fer / SquiggleKit

SquiggleKit: A toolkit for manipulating nanopore signal data

MIT License

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issues

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Running into issues with SquigglePlot.py using fast5 files converted from pod5

#65 yinyuanmtu closed 2 months ago
6
SquigglePlot command is not working

#64 TTT16 opened 3 months ago
6
Estimate length of long homopolymers in DNA

#63 dweemx opened 5 months ago
5
ImportError: Cannot load backend 'TkAgg' which requires the 'tk' interactive framework, as 'headless' is currently running

#62 vetmohit89 opened 1 year ago
1
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

#61 vetmohit89 opened 1 year ago
4
adding stripped out dtw from mlpy - not tested, only hack

#60 hasindu2008 opened 1 year ago
0
no filenames list built

#59 Qvdauwer opened 1 year ago
5
unable to plot individual .fast5 after installing vbz plugin

#58 emmarl25 opened 1 year ago
3
Scrappie replacement

#57 sirselim opened 1 year ago
0
scrappie fasta Illegal instruction

#56 chilampoon closed 9 months ago
0
Fast5_fetcher_multi.py no output

#55 Salvobioinfo opened 2 years ago
2
Plotting specific readID from slow5 or blow5 file can take a long time

#54 waltergallegog closed 2 years ago
4
SquigglePlot.py with -n 20 option produces more than one plot

#53 waltergallegog closed 2 years ago
3
Error with hdf5 plug in

#52 miles-jon closed 2 years ago
9
Error plotting with SquigglePlot.py

#51 capoony opened 2 years ago
8
Job is in D state for a long time

#50 kaltinel opened 2 years ago
10
Added the updated content from other repo

#49 AlyneG closed 3 years ago
0
Issue about MotifSeq.py.

#48 Goatofmountain opened 3 years ago
1
squigglepull scale and pA_convert functions does not work with multifast5 files

#47 Akanksha2511 closed 3 years ago
8
demultiplexing fast5

#46 aspitaleri opened 3 years ago
19
SquigglePull - KeyError: 'Unable to open object (component not found)'

#45 asttra opened 3 years ago
2
Using MotifSeq coordinates within single reads to segment fast5 file at those positions.

#44 gallardo-seq opened 3 years ago
5
output files made by SquigglePull.py containing nothing

#43 liu-pinnng opened 3 years ago
12
Issue visualizing squiggles with recent fast5 file

#42 mriekje opened 3 years ago
3
Issue with h5py

#41 XPHenry closed 3 years ago
3
dRNA_segmenter read_dic

#40 smaegol closed 3 years ago
2
Dynamic seq_sum columns selection

#39 noncodo closed 3 years ago
1
Exclude list rather than include

#38 Psy-Fer closed 3 years ago
1
Python3 SquiggleKit

#37 XPHenry closed 4 years ago
2
SquiggleKit can be used for extract raw current signal in specific position of read?

#36 weir12 opened 4 years ago
3
SquigglePlot.py does not result in anything

#35 sem0036 opened 4 years ago
13
Using RNA for MotifSeq

#34 epi-gene opened 4 years ago
9
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

#33 harisankarsadasivan closed 3 years ago
2
MotifSeq output all hits

#32 mattdmem opened 4 years ago
1
SquigglePlot.py cannot open imported single fast5 file

#31 defectsnow closed 4 years ago
5
Add plotting squiggle for a single read from a single multi-fast5 file

#30 nickschurch closed 4 years ago
1
SquigglePlot.py fails for single read from a single multi-fast5 file

#29 nickschurch closed 4 years ago
2
Trouble Installing MLPY

#28 defectsnow closed 4 years ago
10
Fast5_fetcher hanging on 'extracting' stage

#27 dn-ra closed 4 years ago
16
MotifSeq read error

#26 obehrto opened 4 years ago
3
MotifSeq seg faulting at read_bait_model

#25 690645258 closed 4 years ago
3
SquigglePull: KeyError: 'Unable to open object (component not found)' help

#24 690645258 closed 4 years ago
5
dRNA SquiggleKit

#23 pabloacera closed 4 years ago
3
SquigglePull command does not print help

#22 splaisan closed 4 years ago
3
degenerated bases & scrappie squiggle

#21 splaisan closed 4 years ago
7
What does the scaled_mad mean?

#20 youyupei closed 4 years ago
4
Error when using fast5_fetcher.py

#19 pterzian closed 4 years ago
11
Overlaying raw signal of particular target

#18 callumparr closed 4 years ago
2
Erreur de segmentation (core dumped)

#17 DelphIONe closed 4 years ago
10
Cannot import dtw_subsequence from mlpy

#16 shaniAmare closed 5 years ago
19