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The packages I need to have are:
- Nanoplot
- Nanofilt
- Fly
- filtlong
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For each user, we create a persistent folder at a location other than scratch (configurable in json), folder name could be @.
This per-user folder will be mounted into each container at the same loc…
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### Description of feature
Break out the feature for downloading singularity containers from nf-core download and put it in it's own command line. When running nf-core download the tool could incorpo…
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Carrying over https://github.com/apptainer/singularity/issues/5962 from the Singularity repo, please see discussion there.
When I [looked at the code before](https://github.com/apptainer/singular…
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Hi,
I've stumble on the following behaviour recently.
When doing multiple test for a module with a conda profile. The nf-test seems to create a new conda environment for each test.
Would it be poss…
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### Description of the bug
Hi! I was trying to download a non nf-core nextflow pipeline using `nf-core download`, which I understand could (or should?) work. However when I tried this for `epi2me-lab…
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## Initial problem
In attempting to reproduce a different problem in `experimental/python`, I was trying to build CUDA Quantum on a dusty deck OS. I run into this linker failure.
```console
/op…
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I am setting up to use runPrep.sh if possible to run aslprep-0.6.0rc1, which is saved as a .simg in containers/, but runPrep.sh doesn't currently find it.
Most local singularity images are saved with…
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while running:
```
nohup sos run pipeline/mashr.ipynb mash \
--container containers/stephenslab.sif \
--output_prefix Ast_Exc_Inh_Mic_OPC_Oli \
--data output/Ast_Exc_Inh_Mic_OPC_Oli.r…
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```
[INFO ] bids