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ReproNim
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containers
Containers "distribution" for reproducible neuroimaging
Apache License 2.0
25
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14
forks
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FOI: mriqc could leave Xvfb processes behind which would keep some paths not really deleted
#126
yarikoptic
closed
3 weeks ago
2
flake: README example mriqc script, RuntimeError: Xvfb did not start
#125
asmacdo
opened
3 weeks ago
2
Move command to run extract of script from README.md into a helper script
#124
yarikoptic
closed
3 weeks ago
0
Run `tests.yaml` on macOS
#123
jwodder
opened
1 month ago
3
Add walkthrough testing on Mac
#122
yarikoptic
closed
3 weeks ago
4
Place containers in yoda-idiomatic spot
#121
asmacdo
closed
2 weeks ago
4
Add rudimentary testing of executability for freshly added containers
#120
yarikoptic
opened
1 month ago
0
Fails while running on OSX
#119
dnkennedy
opened
1 month ago
3
bids-mriqc is not usable - likely due to our env setting
#118
yarikoptic
closed
2 weeks ago
1
Refer to containers/ subfolder and the correct path in example
#117
yarikoptic
closed
1 month ago
1
Add "etelemetry" to singularity_cmd
#116
yarikoptic
opened
1 month ago
0
[gh-actions](deps): Bump actions/checkout from 3 to 4
#115
dependabot[bot]
closed
1 month ago
0
Add ability to specify version of container when running
#114
jbwexler
closed
2 months ago
4
Provide neurodesk convenience command
#113
yarikoptic
opened
2 months ago
0
Establish collection of health checks
#112
yarikoptic
opened
2 months ago
1
Add option for "--bind" when running containers
#111
jbwexler
opened
2 months ago
1
Also retry on requests.exceptions.HTTPError
#110
yarikoptic
closed
4 months ago
0
create_singularities: Retry Docker Hub API requests on connection failures/timeouts
#109
jwodder
closed
4 months ago
1
Add retries for docker hub connections
#108
yarikoptic
closed
4 months ago
0
ENH: make pass_git_config to allow to have no default + pass annex.pidlock if defined
#107
yarikoptic
closed
6 months ago
1
[gh-actions](deps): Bump actions/setup-python from 4 to 5
#106
dependabot[bot]
closed
6 months ago
0
Convert `freeze_versions` to Python
#105
jwodder
closed
7 months ago
3
add Neurodocker-generated recipe for simple nilearn container
#104
adswa
closed
7 months ago
1
[gh-actions](deps): Bump actions/checkout from 3 to 4
#103
dependabot[bot]
closed
9 months ago
0
[FIX] add matplotlib envvar, fix non-writeable cache dir error
#102
bpinsard
closed
10 months ago
1
rewrite freeze_versions in Python
#101
yarikoptic
closed
7 months ago
4
containers/scripts/singularity_cmd: Argument list too long
#100
DVSneuro
closed
1 year ago
2
Switch from Travis to GitHub Actions
#99
jwodder
closed
2 months ago
7
Move from travis to github actions
#98
yarikoptic
closed
2 months ago
4
apptainer, cache write error
#97
bpinsard
closed
10 months ago
2
[gh-actions](deps): Bump codespell-project/actions-codespell from 1 to 2
#96
dependabot[bot]
closed
1 year ago
1
Investigate CDI support
#95
yarikoptic
opened
1 year ago
0
Document `freeze_versions` into top-level dataset
#94
asmacdo
closed
1 year ago
1
Bind files/directories into containers?
#93
effigies
opened
1 year ago
5
BF: freeze_versions - do not hardcode .sing extension, make overall more flexible, robust and test
#92
yarikoptic
closed
1 year ago
0
fmriprep-fake docker image breaks build process
#91
yarikoptic
opened
1 year ago
4
Update walkthrough for the new preferable way of freezing in superds
#90
yarikoptic
closed
1 year ago
1
Make testing actually test the version of this dataset as provided in PR
#89
yarikoptic
opened
1 year ago
0
Adjust freeze script to allow to "freeze" in super dataset by copying container definition
#88
yarikoptic
closed
1 year ago
1
shellcheck all scripts
#87
yarikoptic
closed
1 year ago
0
make "freeze_version" freeze them in the "super-dataset" instead of the ReproNim/containers
#86
yarikoptic
closed
1 year ago
6
JOSS paper
#85
yarikoptic
opened
1 year ago
1
Enh workflow
#84
asmacdo
closed
1 year ago
0
Warning in output: Set MPLCONFIGDIR when running bids-mriqc
#83
asmacdo
opened
1 year ago
4
MRIQC OOM error causes unhelpful nipype NodeExecutionError
#82
asmacdo
closed
1 year ago
3
Expanded version of explanations for typical workflow
#81
yarikoptic
closed
1 year ago
1
Elaborate on typical workflow
#80
yarikoptic
closed
1 year ago
0
Go through the typical workflow and "relate" to reproman workflow
#79
yarikoptic
opened
1 year ago
3
stick to ubuntu-20.04 to keep access to our singularity-container
#78
yarikoptic
closed
1 year ago
0
Add fmriprep-fake BIDS-App container
#77
yarikoptic
opened
1 year ago
0
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