ReproNim containers issues

ReproNim / containers

Containers "distribution" for reproducible neuroimaging

Apache License 2.0

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issues

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Go through the typical workflow and "relate" to reproman workflow

#79 yarikoptic opened 1 year ago
3
stick to ubuntu-20.04 to keep access to our singularity-container

#78 yarikoptic closed 1 year ago
0
Add fmriprep-fake BIDS-App container

#77 yarikoptic opened 1 year ago
0
Update GitHub Actions action versions

#76 jwodder closed 1 year ago
0
Translate `create_singularities` to Python

#75 jwodder closed 2 years ago
3
Add containers for ABCD apps

#74 yarikoptic opened 2 years ago
2
Rewrite create_singularities in Python

#73 yarikoptic closed 2 years ago
4
Add fMRIprep 22.0.1

#72 jsmentch closed 2 years ago
4
MRIQC migration to nipreps: missing latest release

#71 bpinsard closed 2 years ago
5
"Semantic" shim to provide "ReproNim"ification of outputs

#70 yarikoptic opened 2 years ago
0
need to account for renaming

#69 yarikoptic closed 2 years ago
1
RF: use quay.io images with custom one for -arm64

#68 yarikoptic opened 2 years ago
0
Support M1 (arm64) Macs

#67 yarikoptic opened 2 years ago
3
Robustify deployment or script to not produce broken singularity images

#66 yarikoptic opened 2 years ago
0
issue with fmriprep v21.0.0 image

#65 jbwexler closed 2 years ago
3
Add neurodesk singularity containers to the collection

#64 yarikoptic closed 1 year ago
21
Allow for setting to map PWD into consistent path inside container

#63 yarikoptic opened 2 years ago
0
"Remote origin not usable by git-annex"

#62 jbwexler closed 2 years ago
12
Add QSIPrep 0.14.2

#61 mattcieslak closed 3 years ago
4
add qsiprep image

#60 mattcieslak closed 3 years ago
2
add image of newest version of fmriprep (20.2.3)

#59 jbwexler closed 2 years ago
0
Fix mac tmpdir issue

#58 chaselgrove closed 3 years ago
1
Socket creation fails for mac+tmpdir+docker+singularity

#57 chaselgrove closed 3 years ago
1
ENH: REPRONIM_DOCKER_OPTS env var to provide extra options for docker invocation

#56 yarikoptic closed 3 years ago
0
For uber-reproducibility - make zoneinfo always be UTC inside the container

#55 yarikoptic closed 3 years ago
0
BF+ENH/RF(TST): more of binding fixups, enhance testing setup

#54 yarikoptic closed 3 years ago
3
prototypical example fails on a fresh NITRC-CE EC2 instance: BIDS root does not exist

#53 yarikoptic opened 3 years ago
0
special treatment to stop underlying docker container if running via shim?

#52 yarikoptic opened 3 years ago
0
fails to run (mriqc) singularity container through docker

#51 yarikoptic closed 3 years ago
3
"Typical workflow" observations on Windows

#50 adswa opened 3 years ago
0
Use docker images support in datalad-container to construct(/run?) our docker shim

#49 yarikoptic opened 3 years ago
0
script to mirror all versions of containers from docker hub

#48 yarikoptic opened 3 years ago
13
Dedent and place under ```shell ``` all shell examples in README.md

#47 yarikoptic closed 4 years ago
0
ENH: Test workflow also on push

#46 yarikoptic closed 4 years ago
1
ENH(TST): Test the snippet in README.md within github workflows

#45 yarikoptic closed 4 years ago
1
Typical workflow failing

#44 chaselgrove closed 4 years ago
5
Need to avoid/tolerate race condition in calling git config

#43 yarikoptic closed 4 years ago
1
WiP: update our singularity docker shim to fixup tests etc

#42 yarikoptic closed 3 years ago
2
RF/BF: rely on "hash singularity" command instead of OSTYPE check to decide to use singularity

#41 yarikoptic closed 4 years ago
2
Tests fail on Debian for me

#40 yarikoptic closed 3 years ago
1
sed -i workaround for mac os

#39 chaselgrove closed 4 years ago
2
added zenodo metadata file

#38 chaselgrove closed 4 years ago
0
provide .zenodo.json file with proper full names

#37 yarikoptic closed 4 years ago
1
scripts/freeze_containers - provide workaround for absent sed -i on OSX

#36 yarikoptic closed 4 years ago
0
bids/hcppipelines does not expose entrypoint, when original docker container does

#35 yarikoptic opened 4 years ago
1
Quick help on container output

#34 dorianps opened 4 years ago
0
Singularity has "native" support for OSX

#33 yarikoptic closed 4 years ago
2
Add https://github.com/ml-tooling/ml-workspace

#32 yarikoptic opened 4 years ago
2
OSX travis enhancements

#31 chaselgrove closed 5 years ago
1
ENH: Added line to singularity-shim Dockerfile to clean up apk cache

#30 mjtravers closed 5 years ago
0

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