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Hi, this is Ken EBISAWA at ISAS/JAXA. I am trying to install Singularity/litebird_sim package on JAXA's super-computer JSS3.
This is what I did:
git clone https://github.com/litebird/litebird_sim l…
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Hello,
i have been running ks4 with singularity successfully in the past week, but today i got an error saying docker module not found:
```
ModuleNotFoundError Traceback (…
a-zmz updated
2 months ago
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### Description of the bug
I am trying to run the scrnaseq nextflow workflow with the following error message:
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:GTF_GENE_FILTER ([])'
…
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I used the commands to create a reference for AnnotSV:
```
wget http://ftp.ensembl.org/pub/release-
111/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.chr.gtf.gz
wget http://hgdownload.cse.ucsc.edu/ad…
yr542 updated
2 weeks ago
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Hello,
unfortunately I have issues using the docker image. Using run, it can't find entripoint.py, and when using exec, there are issues sourcing the .bashrc script.
Here is what I do:
```
e…
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For lack of a better place I will store my findings on how to run ewatercycle on Mistral in this issue with the aim that this will be part of the future docs.
On Mistral we can launch a Jupyter La…
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Does this code can be run on GPUs?
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`pip install`ing this package fails when using `python3.12`:
```
$ python3.12 -m pip install singularity-compose
Defaulting to user installation because normal site-packages is not writeable
Col…
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Ranked by time/complexity:
1. Batch script for running lots of APSIM simulations
2. Combining multiple SQLite databases into one
3. How to create large number of config files? (unsure on how to t…
JBris updated
2 months ago
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This is a (basic) script to create and populate a CVMFS alien cache for use on systems that do not have access to the internet (but you do require internet access to perform the initial run of the scr…