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> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
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## What
User researchers on The NHS Website often need to know which pages are performing well and which pages need some work.
We are working on a small feedback pattern to collect satisfactio…
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Dear Prof. Wang,
I meet an trouble to prepare `gwasCatalog` similar format files. I downloaded gwasCatalog from gwasCatalog website, rather than UCSC and then reformat it as "chr\tstart\tend\anno"…
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when i change jpg to jpeg in line 108 it says:
Using TensorFlow backend.
Traceback (most recent call last):
File "main.py", line 109, in
if not img:
ValueError: The truth value of an arr…
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Human 10X snRNA-seq support.
*Why?* Initially the interest in snRNAseq came from the need to be able to process large cells (i.e. cancer) or oddly shaped cells (i.e. brain neurons) that would not pro…
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Add GWAS catalog file to repo. Add notebook that
- matches diseases from GWAS catalog to our diseases (perhaps use fuzzywuzzy for matching, do some manual matching if needed afterward)
- matches …
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Hi Julianne,
After an apparently successful run of jx_indexer.py in index mode, I ran jx_indexer.py in experiment mode which finished with no errors but ended up with an OUTPUT_DIR containing empty t…
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Hi there, I have had a problem while using the UNet, and I will really appreciate that if someone could help me with this.
I have 13000 images of skin cancer with black and white (binary mask) to t…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…