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Hi @alexdobin
Thanks again for writing & maintaining STAR. The latest diploid mapping feature is very cool. I was wondering how difficult you think it would be to extend it even further, to map to …
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Hello everyone
I am trying to use the function 'clump_data' with the R package 'TwoSampleMR'.However, I find that this problem happens with some data. The problem is that Server code: 503; Server is …
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Hi,
This is just a question and not an "issue"... I was wondering if if Bigdawg is able to do phasing for subsequent imputation using other programs.
I noticed in the 2016 Human Immunology pape…
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Hello,
I have WGS sequencing data, incuding the bam files and the called SNPs as vcf. I used now stitch to impute my SNPs based on the bam files and the SNP positions. However, I realized since I am …
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Hi,
I am a molecular biologist. Briefly, I am working on a non-model species, with no genomic data. I have some Genotyping-By-Sequencing data from different populations and I want to use npGeno to …
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Hi,
In your paper, you say that you "discard those reads with low alignment quality, including MAPQ < 20, aligned length < 30 nt and FLAG with UNMAP, SECONDARY, QCFAIL (and DUP if UMI is not applic…
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Dear Torsten
I am very interested HaploBlocker tool to perform haplotype block analysis of my data. Haploview with Gabriel method gave nothing special so I thought that may your algorythm would be mo…
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I am trying to demultiplex tumor samples using genotype data from healthy cells, and demuxlet is calling the majority of my tumor cells doublets. I'm looking for any insight about whether somatic muta…