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Hi again! Some of the .sra runs I'm working with seem to have been split into smaller .sra runs. From my understanding, that means I have to merge the .bam files after aligning each of these files. Wi…
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This is checkup ticket for cdevoto to respond to for actions that need to be taken for SILVA and SRA inserts.
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**Community Note**
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It should be possible to use a standard relayer API instance as a massive source.
AusIV updated
6 years ago
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## Request:
- [ ] User can select a target task and get a WAG SRA date based on some combinations of the following:
- [ ] PERT date using three-point estimates (required by the DI-MGMT-81861B any…
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```bash
Channel
.fromSRA('ERR3561489')
.println()
results in:
[ERR3561489, [/vol1/fastq/ERR356/009/ERR3561489/ERR3561489_1.fastq.gz, /vol1/fastq/ERR356/009/ERR3561489/ERR3561489_2.fastq…
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### Data Owner Name
National Library of Medicine (NLM)
### Data Owner Country/Region
United States
### Data Owner Industry
Resources, Agriculture & Fisheries
### Website
https://www.ncbi.nlm.ni…
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Currently the SraRunTable.txt is coming from the "Metadata" tab in the NCBI SRA Run Table web GUI. We'll need to find a way to automatically download this table.
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As reported in https://github.com/ewels/sra-explorer/issues/14 and mentioned in [this blog post](https://ncbiinsights.ncbi.nlm.nih.gov/2019/10/17/users-of-the-sra-ftp-site-try-the-sra-toolkit/), the N…
ewels updated
3 years ago