issues
search
PhyloGrok
/
VCFgenerator
Automated variant calling app for NextGen evolutionary genomics
GNU General Public License v3.0
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Halodev
#24
PhyloGrok
closed
10 months ago
0
use gitclone to install and troubleshoot the repo
#23
PhyloGrok
opened
1 year ago
0
Set up connection to the GitHub repo
#22
nluu1
closed
1 year ago
2
Re-adjust user's project folder file path based on user's preference
#21
nluu1
closed
1 year ago
2
Annotation specified by user needs to be implemented
#20
nluu1
closed
1 year ago
5
Get SRA metadata along with the reference and SRA run downloads
#19
PhyloGrok
opened
1 year ago
5
Download RefSeq genomes by strain (rather than by ncbi-datasets designated genome)
#18
PhyloGrok
closed
1 year ago
0
Mummer runs generically based on a single RefSeq genome and genus uid. Integrated into the overall workflow.
#17
PhyloGrok
closed
1 year ago
0
NexteraPE-PE.fa file should be accessible to the trimmomatic wherever it runs.
#16
PhyloGrok
opened
1 year ago
0
Automated workflow should run in the system, rather than user home directory.
#15
PhyloGrok
closed
1 year ago
1
trimmomatic error from the script
#14
PhyloGrok
closed
1 year ago
1
Make the MUMMER4 runs into a .sh executable
#13
PhyloGrok
closed
1 year ago
9
NCBI Datasets download configuration
#12
PhyloGrok
closed
1 year ago
1
Multi-threading for the workflow steps
#11
PhyloGrok
closed
1 year ago
1
Generate a collection of dotplots
#10
PhyloGrok
closed
1 year ago
1
Mutation rate analysis
#9
PhyloGrok
closed
1 year ago
4
IGV display of individual mutant regions
#8
PhyloGrok
opened
1 year ago
0
Annotation step for .VCF data
#7
PhyloGrok
closed
1 year ago
8
Add a GUI menu for selecting a BioProject and user input using the tkinter python package.
#6
PhyloGrok
opened
1 year ago
2
R-Shiny/Shinyserver web app for pH experiment circos plots
#5
PhyloGrok
opened
1 year ago
3
Clean Mummer4 run from the sample data
#4
PhyloGrok
closed
1 year ago
1
Variant calling workflow - script automation
#3
PhyloGrok
opened
1 year ago
26
Error running bcftools (part of samtools package)
#2
PhyloGrok
closed
1 year ago
1
Error running Mummer4 - .postscript doesn't readout
#1
PhyloGrok
closed
1 year ago
1