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### Title
Ciftipy
### Description
CiftiPy is a Python library designed to streamline the handling of complex CIFTI files used in neuroimaging research. CIFTI files represent gray matter as cortical…
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Hello, in the **output/connectivity.a2009s** file generated by **TVB-recon**, there is a file called **average_ orientations.txt**, I want to know what this is. Recently, I want to use **openmeeg** to…
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Hello all,
I'm trying to modify some of the model's components with a bit more subcortical detail, but it looks like when I run nengo-gui I'm unable to run the model and cannot drag across the scre…
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Hi
I keep getting a KeyError with the parcel_naming.py
``
python parcel_naming.py random_all.nii.gz random '10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,210,220,230,240,25…
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### Summary
If an `output_spec` contains a trait `File(exists=True)`, and that output field is not passed as an input to another node, then the file will get cleaned up by `remove_unnecessary_outpu…
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Hi Everyone,
I need to read various volumetric (subcortical) and morphometry stats from Freesurfer output (e.g. SUB/stats/aseg.stats)
https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats
…
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I've been struggling to interface fmriprep outputs to the fsfast first level analysis pipeline and was wondering if this problem had been solved by the community?
I've got a start for the surface …
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At this moment the reports provide averaged TSNR over the entire brain. Because GM, WM and CSF have very different levels of TSNR, a lot of information is lost in the process of averaging. It would be…
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Looks like an interesting project! I'm curious about the brain measures you'll use. Does the UK Biobank have derived brain measures like cortical thickness, or will you have to compute your brain meas…
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Hello Dr. Mowinckel,
Is the AAL2 atlas available in ggseg or are there plans to include this atlas? Thanks!
Best,
John
_Originally posted by @neuropil in https://github.com/ggseg/ggsegExtra/…