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Hi, I would like to know how STAR usually handles highly variably gene sequences like V(D)J sequences that code for parts of the TCR / BCR (T-cell and B-cell receptors), please?
I guess it depends …
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I am having difficulty interpreting the results of a recent CellphoneDB DEGs analysis ran with the Cellsign module. I provided an active_TF.txt file to my DEGs analysis, but the results don’t seem to…
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While going through some of the cell population/marker names used by several
HIPC centers, we came across the following ones which are not present in Cell
Ontology.
T follicular helper 1 cell …
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I am running scanpy anndata through CellChat and my code works except for when it gets to computing the communication probability. This is the error I get. ad ad_object # access normalized data matr…
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This rule could be implemented in SPARQL; if there is an in-taxon then all PRO IDs should be at the species level (i.e uniprot) or below and should reference a PRO class that has a matching in-taxon.
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Thank you very much for providing cellchat. Below are my codes and files. Could you please help me find out where the problem is? I have been checking for several days and browsing all the comments ab…
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Hi Matt,
A girl in my lab is trying to set up ITEP with some bacterial genomes. She ran into an issue: convertGenbank2table.py fails because some of here genbank files (downloaded from RAST) have join…
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Hi there,
Congrats on a great work, and thanks for developing this package.
I am attempting to pull TCR-seq data for T cells that also have the GEX/CITE-seq Seurat objects.
**QUESTION 1.** …
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Please provide as much information as you can:
* **Suggested term label:**
I _think_ this is the term I want, but please see the mechanism and advise differently if not.
receptor ligand activa…
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Hi! This is a great package with many useful resources!
After looking into it, we were wondering if it can also be used to model cellular communication. More precisely, we would like to extend INDRA…