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Given what we've learned from Franco and Josiah's presentation the other day, we could probably replace the figure on the front of this app with something running non-ensemble tractography and thereby…
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Not urgent, nor really important, just an idea. I may have brought this up in the past, but can't seem to find any traces of it easily (so may have *not* brought it up :man_shrugging:).
In princip…
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Recently encountered this error on tractography quality check:
Index exceeds the number of array elements (2).
Error in wma_classificationStrucGrouping>@(x)x(1:length(removalVec{iRemoveLabels})) (…
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Given a DTI dataset scanned with PatientPosition as FFDR (Face First Decubitus Right) rather than the common HFS (Head First Supine):
Need to ensure that DWIConvert, as well as tensor estimation an…
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Much like is done for image files, it should be possible to identify different types of track data storage based on the file extension, and have the `Tractography::Reader` and `Writer` classes call re…
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Hi! There are FA, trace etc for each tensor in diffusion measurements. However in many articles with two-tensor UKF tractography application it is not specified which of two tensor's data had been use…
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Hi,
I am trying to understand how to use the scoring system, and to keep things simple I am trying to run the system to evaluate the ground-truth .trk files.
The steps I follow are:
1. export t…
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Hello,
Although UKFTractography completed without error for most of my cases, I have 3 cases that threw the following error. Any insight is appreciated - thank you!
(pnlpipe3) [root@4d78e987681…
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The ORG atlases in the [ORG-Atlases](https://github.com/SlicerDMRI/ORG-Atlases) repository have received a few updates over time, e g.
https://github.com/SlicerDMRI/ORG-Atlases/commit/fb1997318c6e8c2…
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I have recently been working with .tck fiber tractography files generated by MRtrix3, and all processing steps were conducted within the DWI space. However, upon attempting to open these .tck files in…