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Hi,
I got following errors when compiling Look4LTRs, is there some bug in chromosometest?
Best,
Kun
```
[ 88%] Linking CXX executable look4ltrs
[ 88%] Built target look4ltrs
Scanning depe…
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Hello Jens,
I tried to use gemoma to annotate the genome and
the input format for gff file is the same as the test data so I don't understand why it didn't work out
java -jar GeMoMa-1.9…
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- [x] Download the Genome from NCBI
GCF_000767585.1_PRJNA234474_Ca_dromedarius_V1.0_genomic.fna.gz`
### LTR-Detection
- [x] **Create index** _find pairs of maximal exact direct repeats that a…
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Hi,
I need some clarification regarding the unclassified reads, and how to classify reads when my species is not present in the database.
I have sequenced the genome of a green alga (Chlorophyt…
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Hi Kevin,
I encounter an error when I ran step4 (pipeline) on my genome annotations. Any idea why this occurred?
Thanks,
Chan
The code I used is:
reasonaTE -mode pipeline -projectFolder Pam…
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Hi,
I have issues with the essentiality function not returning any essential genes due to not finding an intersection point. I attach the histogram of the sample and you can see that there are 2 pe…
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Here are a few suggestions for alignment block filtering that would be very welcome additions to the MafFilter software:
- updating the score for each block when the blocks are processed
- filtering…
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Hi,
I'm trying to use Tephra to generate the TE library for Caenorhabditis briggsae (GCF_000004555.2_CB4_genomic.fna). I downloaded the docker image from Docker Hub and successfully ran the contai…
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Here a description on this software that captures many of the features that we would like to have in our pipeline concerning:
- Methods of analysis
- Organization
- Documentation
- Usability
- Ma…
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Dear all,
The proposal has been made to obsolete GO:0003964 RNA-directed DNA polymerase activity & replace it by its parent
GO:0003720 telomerase activity
see https://github.com/geneontolo…