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Data-derived KPs that ingest and analyze instance-level data from several sources to generate statistical correlation edges recently raised some questions about applying the refactored [RetrievalSourc…
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See https://github.com/NCATSTranslator/ReasonerAPI/issues/192 and associated PR https://github.com/NCATSTranslator/ReasonerAPI/pull/186.
The final TRAPI schema nomenclature and content of their A…
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Just a placeholder issue pointing out the fact that the main repository README needs updating to TRAPI 1.4. This may just mean transferring some of the examples from the implementation guidelines into…
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There are open requests/queries if the ARAX GUI can show Qualifiers. Can we do it?
Examples here:
https://biolink.github.io/biolink-model/guidelines/TRAPI-examples.html
and here:
https://github.co…
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[TRAPI overview page](https://github.com/NCATSTranslator/translator-developer-documentation/blob/main/docs/architecture/trapi.md)
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UPDATED:
Noticed while testing templates for https://github.com/biothings/bte_trapi_query_graph_handler/pull/169
Not doing a full analysis of them right now. These likely won't cause any proble…
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This is for brainstorming these "constraint"/post-query filtering behaviors (we can make other issues once we have a concrete idea of the requirements and logic/behavior we want).
The stuff below …
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Biolink Model 3.0 introduced a new 'qualifier' framework for knowledge representation and TRAPI query. This new framework will require additional KP test edge information for testing, thus, a new KP t…
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We've been assessing the result-level enrichment/augmentation with PFOCR hits. The output today has some consistent issues:
* Too many hits (burden on performance?)
* Low quality, irrelevant hits
…
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To incorporate the PharmGKB API as described in https://github.com/biothings/BioThings_Explorer_TRAPI/issues/556, we need node normalizer to resolve PharmGKB identifiers for genes, diseases, variants,…