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Hi,
If there is only one individual, how depth I need to sequence (whole genome sequencing) if I want to get reliability results using magic, 5X, 10X, 20X or 30X ?
Best,
Kun
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https://doi.org/10.1101/092890
> Next-generation sequencing (NGS) is a rapidly evolving set of technologies that can be used to determine the sequence of an individual's genome by calling genetic v…
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Hi, I'm a new to cnvkit. Thanks for this excellent tool. As it was pointed out in the documentation, CNVkit is primarily designed for use on hybrid capture sequencing data, where off-target reads are …
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**Describe the bug:**
The activation command for `fish` fails for me because there is a `(...)` in the pathname, which `fish` tries to run as a command substitution since the command run by `flox a…
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Hi Developers,
How to set the Varsim parameters to simulate a single-end file of shallow whole-genome sequencing (0.5x) given mean fragment size of 167 bp?
Best
Pitithat
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Hi. Let me describe my data to see if I can use XYalign to find Y-contigs
My data is whole genome re-sequencing data with coverage of ~ 15X, including male and female fish (around 20 each sex)
I h…
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ESKAPE pathogens found in https://www.nature.com/articles/s41597-022-01463-7
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
https:/…
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Issue destinado a recopilar aquellas fuentes bibliográficas, así como datos de secuenciación y herramientas de tratamiento y análisis de los mismos, que podrían resultar útiles e interesantes a la hor…
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collecting references and annotations --
1. [VarCover: Allele Min-Set Cover Software](https://www.sciencedirect.com/science/article/abs/pii/S1525157819304143)
>To facilitate reference-material s…
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This command consumed about 60G RAM. But it phased only 10Mb area. I still left about 2500Mb area to phase. how can I reduce the RAM when phasing a large cohort (~1200) of whole-genome sequencing data…