-
Let me start out by saying I am very excited to use the new tools in 2.1 beta! I downloaded the spinalcordtoolbox_v2.1_beta9_osx.tar.gz from the release archive and installed by running the installer…
-
data:
```
sct_example_data/dmri
```
syntax:
```
sct_get_centerline -i dwi_moco_mean.nii.gz -method auto -t t1 -o test.nii.gz
```
error:
```
WARNING : Option string does not exist and will have no…
-
so that internal structure can be corrected on dmri
-
`sct_label_utils -t cubic-to-point` is redondant with `sct_label_utils -t label-vertebrae`. They could be merged.
`sct_crop_image` should be integrated into `sct_maths` ?
Same for `sct_crop_over_mask…
-
data: sct_example_data/dmri/
syntax:
```
sct_extract_metric -i dti_FA.nii.gz -f label/atlas/ -l sc -m map
```
error:
```
Extract metric within labels...
Number of non-null voxels: 1074
Estimatio…
-
```
What steps will reproduce the problem?
1. load raw dMRI data ( e.g. from main:/tmp/diff_raw
2. compute qball (4th order)
3. render coronal and zoom - > rendering defekt (see shapshot)
4. hide nega…
-
branch: jca_FSL_dependences
Issue on Travis and ferguson.
```
./test_all -f sct_dmri_moco
```
ERROR:
```
...
Volume 4/6:
sct_apply_transfo -i dmri_T0004.nii -d target.nii -w mat_final/mat.T4Warp.ni…
-
Hi, I'm new to nipype, this happens when I try to run the following code:
```
from os.path import abspath
from nipype.workflows.dmri.fsl.artifacts import all_fmb_pipeline
allcorr = all_fmb_pipeline(…
-
```
What steps will reproduce the problem?
1. load raw dMRI data ( e.g. from main:/tmp/diff_raw
2. compute qball (4th order)
3. render coronal and zoom - > rendering defekt (see shapshot)
4. hide nega…
-